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Report for CCDS20578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20578.1 Public Mus musculus 6 Clec2g 23 108 98 CCDS HistoryNCBI Gene:70809Re-query CCDS DB by CCDS ID:20578.1Re-query CCDS DB by GeneID:70809See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20578.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000254.13 ENSMUSP00000000254.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000254.13Link to Ensembl Protein Viewer:ENSMUSP00000000254.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000254Re-query CCDS DB by Protein ID:ENSMUSP00000000254
Original member Current member NCBI NM_027562.4 NP_081838.1 Accepted alive Link to Nucleotide Sequence:NM_027562.4Link to Protein Sequence:NP_081838.1Re-query CCDS DB by Nucleotide ID:NM_027562Re-query CCDS DB by Protein ID:NP_081838Link to BLAST:NP_081838.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081838.1 269 Q9D676-1 269 100% 0 0

Chromosomal Locations for CCDS 20578.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128934417 128934482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128948696 128948802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128979396 128979478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128980184 128980309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128981205 128981383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128981862 128981968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128982946 128983087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGAACATTACAAGGGCTTCCCTACCTATGCTCAACACCACTTGCAGCTGCAGGAGGGAGAAGTGGAATT
TCCTAGGGAGATACGAGGGGACTTTTGACTACTGGATCGGCCTGCACAGAGCGTCGTCTAAGCACCCTTG
GATGTGGACAGACAACACTGAGTATAACAACATGTTTGTGTATCACATGAATGCTCAGTGCCTAAAGAAG
CCAGAAGAAGGCGAAAGCTCCCCCGGAACTGGAGGTGTACATTCTTATAAAATTCTCCAAAGAAATAGTC
TCAGAGCCATCTCCCCTGAGTCTTCTGCTAAGCTTTACTGCTGCTGTGGAGTGATCATGGTCCTCACTGT
AGCTGTAGTTGCTCTTTCTGTTGCTTTGCCAGCAACAAAGACAGAACAGATCCTAATCAACAAGACCTAT
GCTGCTTGCCCGAAAAACTGGATTGGAGTTGGAAATAAATGTTTTTATTTTTCTGAATACACAAGTAACT
GGACATTCGCCCAGACCTTCTGCATGGCACAAGAGGCCCAACTAGCTCGGTTTGACAACGAGAAGGAGCT
GAATTTCCTAATGAGATACAAGGCAAATTTTGATTCCTGGATTGGACTGCACAGAGAGTCGTCAGAGCAC
CCTTGGAAGTGGACAGACAACACTGAGTATAACAACATGATTCCCATCCAGGGAGTGGAAACATGTGCCT
ACCTGAGCGGCAATGGGATCAGCAGTTCCAGGCACTATATACCTCGGATATGGATCTGTAGCAAGCTTAA
CAACTATAGCCTCCACTGCCCAACTCCTGTTCCTGTCTAG

Translation (269 aa):
MNITRASLPMLNTTCSCRREKWNFLGRYEGTFDYWIGLHRASSKHPWMWTDNTEYNNMFVYHMNAQCLKK
PEEGESSPGTGGVHSYKILQRNSLRAISPESSAKLYCCCGVIMVLTVAVVALSVALPATKTEQILINKTY
AACPKNWIGVGNKCFYFSEYTSNWTFAQTFCMAQEAQLARFDNEKELNFLMRYKANFDSWIGLHRESSEH
PWKWTDNTEYNNMIPIQGVETCAYLSGNGISSSRHYIPRIWICSKLNNYSLHCPTPVPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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