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Report for CCDS39275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39275.1 Public Mus musculus 5 Denr 23 108 98 CCDS HistoryNCBI Gene:68184Re-query CCDS DB by CCDS ID:39275.1Re-query CCDS DB by GeneID:68184See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023869.14 ENSMUSP00000023869.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023869.14Link to Ensembl Protein Viewer:ENSMUSP00000023869.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023869Re-query CCDS DB by Protein ID:ENSMUSP00000023869
Original member NCBI NM_026603.4 NP_080879.1 Updated not alive Link to Nucleotide Sequence:NM_026603.4Link to Protein Sequence:NP_080879.1Re-query CCDS DB by Nucleotide ID:NM_026603Re-query CCDS DB by Protein ID:NP_080879
Current member NCBI NM_026603.5 NP_080879.1 Accepted alive Link to Nucleotide Sequence:NM_026603.5Link to Protein Sequence:NP_080879.1Re-query CCDS DB by Nucleotide ID:NM_026603Re-query CCDS DB by Protein ID:NP_080879Link to BLAST:NP_080879.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080879.1 198 Q9CQJ6 198 100% 0 0

Chromosomal Locations for CCDS 39275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123908109 123908214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123915191 123915210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123917200 123917284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123922180 123922263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123924731 123924847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123926998 123927137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123927250 123927294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGCTACTGACATTTCTGAATCCAGCGGGGCGGATTGCAAAGGCGATACGAAGAACAGTGCCAAGTTAG
ATGCGGATTACCCTCTTCGAGTCCTTTATTGTGGAGTCTGTTCATTACCAACAGAGTACTGTGAATACAT
GCCGGATGTTGCTAAATGTAGACAATGGCTAGAGAAGAACTTTCCAAATGAATTTGCAAAACTTACTGTA
GAAAATTCACCCAAACAAGAAACTGGAATTACTGAAGGCCAAGGACCAGTAGGGGAAGAGGAGGAGAAGA
AAAAACAAAAAAGAGGTGGAAGAGGTCAAATAAAACAGAAGAAGAAGACAGTACCACAGAAGGTCACGAT
AGCCAAAATTCCCAGAGCAAAGAAGAAATACGTGACGAGAGTGTGTGGCCTTGCAACTTTTGAAATTGAT
CTCAAAGAAGCACAAAGATTTTTTGCTCAAAAATTCTCGTGCGGTGCCTCAGTGACAGGGGAGGACGAGA
TCATCATTCAGGGAGACTTCACAGATGACATCATTGACGTCATTCAGGAAAAGTGGCCAGAGGTGGATGA
CGACAGCATTGAAGACCTTGGAGAAGTGAAGAAGTGA

Translation (198 aa):
MATDISESSGADCKGDTKNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLTV
ENSPKQETGITEGQGPVGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKIPRAKKKYVTRVCGLATFEID
LKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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