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Report for CCDS19424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19424.1 Public Mus musculus 5 Rchy1 23 108 98 CCDS HistoryNCBI Gene:68098Re-query CCDS DB by CCDS ID:19424.1Re-query CCDS DB by GeneID:68098See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031345.14 ENSMUSP00000031345.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031345.14Link to Ensembl Protein Viewer:ENSMUSP00000031345.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031345Re-query CCDS DB by Protein ID:ENSMUSP00000031345
Original member NCBI NM_026557.4 NP_080833.1 Updated not alive Link to Nucleotide Sequence:NM_026557.4Link to Protein Sequence:NP_080833.1Re-query CCDS DB by Nucleotide ID:NM_026557Re-query CCDS DB by Protein ID:NP_080833
Current member NCBI NM_026557.5 NP_080833.1 Accepted alive Link to Nucleotide Sequence:NM_026557.5Link to Protein Sequence:NP_080833.1Re-query CCDS DB by Nucleotide ID:NM_026557Re-query CCDS DB by Protein ID:NP_080833Link to BLAST:NP_080833.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080833.1 261 Q9CR50 261 100% 0 0

Chromosomal Locations for CCDS 19424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 91949736 91949864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91951821 91951941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91952941 91952967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91953053 91953111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91953214 91953258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91955535 91955613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91957535 91957650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91957878 91957997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91962630 91962719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGCGGCGACGGCGCGGGAAGATGGCGTCCGCAACCTGGCGCAGGGGCCGCGGGGCTGCGAGCACTATG
ACAGAGCTTGTCTCCTCAAGGCACCTTGTTGTGACAAGCTTTATACCTGCCGGCTGTGTCACGATACCAA
TGAAGATCATCAGCTAGATCGTTTCAAAGTCAAGGAAGTGCAGTGCATCAACTGTGAAAAACTCCAACAT
GCCCAGCAGACTTGTGAAGACTGTAGCACATTGTTTGGAGAATATTACTGCAGTATTTGCCACCTGTTTG
ACAAAGATAAGAGGCAGTACCACTGTGAGAGCTGTGGGATTTGTAGGATTGGTCCAAAGGAAGATTTTTT
CCATTGCTTGAAATGTAATTTATGCCTAACCACGAATCTTCGAGGAAAACACAAGTGTATTGAAAATGTT
TCCCGGCAGAATTGTCCAATATGCTTGGAGGACATTCACACCTCCCGTGTTGTTGCTCACGTCTTGCCGT
GTGGGCATCTCCTACATAGAACGTGTTATGAAGAAATGTTGAAAGAAGGTTACAGATGCCCATTGTGTAT
GCATTCTGCCTTAGACATGACTCGGTACTGGAGACAACTAGATACTGAGGTAGCACAGACTCCCATGCCA
TCCGAATACCAGAACGTGACTGTTGACATTCTCTGCAATGACTGTAATGGACGATCCACAGTCCAGTTCC
ATATCTTAGGCATGAAATGTAAGCTTTGTGACTCCTACAATACTGCCCAAGCTGGAGGCCGTAGAGTGCC
AGTGGATCAGCAGTGA

Translation (261 aa):
MAATAREDGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQH
AQQTCEDCSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIENV
SRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHSALDMTRYWRQLDTEVAQTPMP
SEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGGRRVPVDQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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