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Report for CCDS18387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18387.1 Public Mus musculus 4 Itgb3bp 23 108 98 CCDS HistoryNCBI Gene:67733Re-query CCDS DB by CCDS ID:18387.1Re-query CCDS DB by GeneID:67733See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18387.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000146258.1 ENSMUSP00000117153.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146258.1Link to Ensembl Protein Viewer:ENSMUSP00000117153.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146258Re-query CCDS DB by Protein ID:ENSMUSP00000117153
Original member Current member NCBI NM_026348.4 NP_080624.1 Accepted alive Link to Nucleotide Sequence:NM_026348.4Link to Protein Sequence:NP_080624.1Re-query CCDS DB by Nucleotide ID:NM_026348Re-query CCDS DB by Protein ID:NP_080624Link to BLAST:NP_080624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080624.1 176 Q9CQ82-1 176 100% 0 0

Chromosomal Locations for CCDS 18387.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 99769495 99769541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99780762 99780821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99781877 99781970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99789601 99789679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99798696 99798762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99802097 99802232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99814058 99814100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99829083 99829087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGCCAGTTAAAAGATCACTGAAACTGGATGATCAGTTTGAAAAAAATTCATTTAGTCCTTCAAAAATCG
TGAGGAAGAAAAGTATTACAGCTTATTCTCCTACTACTGGAACTTATCAGTTGAGCCCATTTTCTTCTCC
CGCAACCCCCAAAGAACAGGAGCACAGAAACGGACCATCAAATGAAACAAGGAAACGGAGTAACTTGAGC
TCACCTGTAAGACAGGAGTCCACAGTGAAAGACAGGGATGGATTCATGGTGTTGCTATCTAAAATTGAGA
TATCATCAGAGAAAACCATGGAGATAATGAAAAATCTAAGTAGTATACAGGCTTTGGAGGGCAACAGACA
ACTTGAAGATCTCATTGGTGTTTCCCTAGTACCATGCTCCTTAAAAAGTGAAGCAAGGAAAACCAAAGAA
CTAATGACTAAAGTAATAAAACAAAAGTTGTTTGAAAAGAAAAAATCAAGAATTACTCCCAAAGATCATC
ATCTTGACAGCTTTGAATTCCTTAAAGCCATTTTGAACTGA

Translation (176 aa):
MPVKRSLKLDDQFEKNSFSPSKIVRKKSITAYSPTTGTYQLSPFSSPATPKEQEHRNGPSNETRKRSNLS
SPVRQESTVKDRDGFMVLLSKIEISSEKTMEIMKNLSSIQALEGNRQLEDLIGVSLVPCSLKSEARKTKE
LMTKVIKQKLFEKKKSRITPKDHHLDSFEFLKAILN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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