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Report for CCDS15742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15742.1 Public Mus musculus 2 Zmynd19 23 108 98 CCDS HistoryNCBI Gene:67187Re-query CCDS DB by CCDS ID:15742.1Re-query CCDS DB by GeneID:67187See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15742.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028350.8 ENSMUSP00000028350.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028350.8Link to Ensembl Protein Viewer:ENSMUSP00000028350.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028350Re-query CCDS DB by Protein ID:ENSMUSP00000028350
Original member Current member NCBI NM_026021.4 NP_080297.1 Accepted alive Link to Nucleotide Sequence:NM_026021.4Link to Protein Sequence:NP_080297.1Re-query CCDS DB by Nucleotide ID:NM_026021Re-query CCDS DB by Protein ID:NP_080297Link to BLAST:NP_080297.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080297.1 227 Q9CQG3-1 227 100% 0 0

Chromosomal Locations for CCDS 15742.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 24949997 24950047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24951473 24951532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24952586 24952692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24953236 24953376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24958036 24958216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24958918 24959061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGACCGACTTTAAATTGGGCATCGTGCGGCTCGGCCGGGTGGCCGGGAAGACCAAATACACACTGATCG
ATGAGCAAGACATACCACTGGTGGAGAGCTACTCCTTTGAGGCTCGAATGGAAGTAGATGCTGATGGAAA
TGGTGCTAAGATATTTGCATATGCCTTTGACAAAAACCGAGGAAGGGGCTCTGGCAGGCTTCTACATGAG
CTGCTGTGGGAACGACACAGGGGAGGTGTGGCTCCCGGGTTTCAGGTGGTACATCTCAATGCTGTGACTG
TGGACAATCGCCTGGACAACCTGCAGCTGGTACCATGGGGCTGGCGACCCAAAGCTGAAGAGACCTCCAG
CAAACAAAGGGAGCAAAGCTTATACTGGCTTGCAATCCAGCAGCTTCCCACAGACCCTATAGAAGAACAA
TTCCCTGTCTTGAATGTGACCCGGTACTATAATGCCAATGGGGATGTGGTGGAAGAAGAAGAAAATTCCT
GTACCTACTATGAGTGTCATTATCCTCCTTGTACGGTGATTGAAAAGCAGCTTCGAGAGTTCAACATCTG
TGGGCGTTGCCAGGTGGCTCGATACTGTGGCTCTCAGTGCCAGCAGAAGGACTGGCCTGCCCACAAGAAG
CACTGTCGGGAGAGGAAGCGTCCCTTCCAGCATGAGCTTGAGCCAGAGCGATGA

Translation (227 aa):
MTDFKLGIVRLGRVAGKTKYTLIDEQDIPLVESYSFEARMEVDADGNGAKIFAYAFDKNRGRGSGRLLHE
LLWERHRGGVAPGFQVVHLNAVTVDNRLDNLQLVPWGWRPKAEETSSKQREQSLYWLAIQQLPTDPIEEQ
FPVLNVTRYYNANGDVVEEEENSCTYYECHYPPCTVIEKQLREFNICGRCQVARYCGSQCQQKDWPAHKK
HCRERKRPFQHELEPER


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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