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Report for CCDS22118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22118.1 Public Mus musculus 8 Fbxo25 23 108 98 CCDS HistoryNCBI Gene:66822Re-query CCDS DB by CCDS ID:22118.1Re-query CCDS DB by GeneID:66822See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043520.4 ENSMUSP00000039544.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043520.4Link to Ensembl Protein Viewer:ENSMUSP00000039544.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000043520Re-query CCDS DB by Protein ID:ENSMUSP00000039544
Original member Current member NCBI NM_025785.3 NP_080061.1 Accepted alive Link to Nucleotide Sequence:NM_025785.3Link to Protein Sequence:NP_080061.1Re-query CCDS DB by Nucleotide ID:NM_025785Re-query CCDS DB by Protein ID:NP_080061Link to BLAST:NP_080061.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080061.1 357 Q9D2Y6 357 100% 0 0

Chromosomal Locations for CCDS 22118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13914951 13915084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13920948 13921048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13921885 13921934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13923925 13924017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13926948 13927041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13929256 13929440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13931182 13931364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13935146 13935289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13939563 13939652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGCCGTTTCTGGGTCAGGACTGGAGGTCCCCTGGATGGAGCTGGATTAAAACCGAGGATGGGTGGAAAA
GGTGTGACCCCTGTAGCCACGAGCTCAGGAGCGAGGATAGCCAGTACACCATCAACCACAGCATTATCTT
AAATAGTGGTGAAGAAGAAATATTCAACAATGAGTGTGAATACGCAGCCAAAAAGAGGAAGAAGGAACAT
TTTGGAAATGACACAGCTGCTCACAGTTTTTATCGTGAAAAATGGATCTACGTCCATAAGGAAAGCACAA
AGGAAAGGCATGGCTACTGCACCCTGGGAGAAGCCTTCAACCGGCTAGACTTCTCAAGTGCCATTCAGGA
CATCAGGAGGTTCACTTACGTGGTCAAACTACTGCAGCTAATTGCGAAGTCCCAGTTAACCTCACTGAGT
GGAGTGGCACAGAAGAACTACTTCAACATTTTGGATAAAATCGTCCAAAAGGTTCTTGATGACCATCAGA
ACCCTCGCCTGATCAAAGGCCTCCTCCAGGACCTGAGCTCCACCCTTGGCATCCTGGTGAGAGGGGTGGG
GAAGTCAGTGCTAGTCGGGAACATCAACATCTGGATCTGCCGCCTGGAGACCGTCCTCAGCTGGCAGCAG
CAGCTGCAGAACCTCCAGGTGACAAAGCAGGTAAACACTGGCCTCACACTCAGTGACCTGCCCCTGCACA
TGCTGAACAACATCCTGTACCGTTTCTCAGATGGCTGGGACATTGTCACCCTGGGCCAGGTAACACCAAC
CCTGTACATGCTCAGTGAAGACAGGCGGCTGTGGAAGCGACTGTGTCAGTACCACTTTGCTGAGCAGCAG
TTTTGTAGACATTTGATCCTTTCAGAAAAAGGTCATATCGAGTGGAAGCTGATGTATTTCACGCTTCAGA
AGTATTACCCGACCAAAGAGCAGTACGGGGACACGCTACACTTCTGCCGCCACTGCAGCATCCTCTTCTG
GAAGGACTCGGGACACCCCTGCACCGCAGCTGACCCCGACAGCTGCTTCACTCCTGTGTCTCCGGAGCAC
TTCATTGACCTCTTCAAGTTCTGA

Translation (357 aa):
MPFLGQDWRSPGWSWIKTEDGWKRCDPCSHELRSEDSQYTINHSIILNSGEEEIFNNECEYAAKKRKKEH
FGNDTAAHSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIRRFTYVVKLLQLIAKSQLTSLS
GVAQKNYFNILDKIVQKVLDDHQNPRLIKGLLQDLSSTLGILVRGVGKSVLVGNINIWICRLETVLSWQQ
QLQNLQVTKQVNTGLTLSDLPLHMLNNILYRFSDGWDIVTLGQVTPTLYMLSEDRRLWKRLCQYHFAEQQ
FCRHLILSEKGHIEWKLMYFTLQKYYPTKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPEH
FIDLFKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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