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Report for CCDS18799.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18799.1 Public Mus musculus 4 Rpl11 23 108 98 CCDS HistoryNCBI Gene:67025Re-query CCDS DB by CCDS ID:18799.1Re-query CCDS DB by GeneID:67025See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18799.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102536.10 ENSMUSP00000099595.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102536.10Link to Ensembl Protein Viewer:ENSMUSP00000099595.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102536Re-query CCDS DB by Protein ID:ENSMUSP00000099595
Original member Current member NCBI NM_025919.3 NP_080195.1 Accepted alive Link to Nucleotide Sequence:NM_025919.3Link to Protein Sequence:NP_080195.1Re-query CCDS DB by Nucleotide ID:NM_025919Re-query CCDS DB by Protein ID:NP_080195Link to BLAST:NP_080195.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080195.1 178 Q9CXW4 178 100% 0 0

Chromosomal Locations for CCDS 18799.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136049987 136050016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136050280 136050390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136051171 136051302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136051614 136051720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136052567 136052717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136053348 136053353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGGCGCAAGATCAAGGGGAAAAGGAGAACCCCATGCGGGAACTGCGCATCCGCAAGCTCTGCCTCAATA
TCTGCGTCGGGGAGAGCGGAGACAGACTGACCCGGGCAGCCAAGGTGTTGGAGCAGCTCACAGGCCAGAC
CCCGGTGTTCTCCAAAGCTAGATACACTGTCAGGTCCTTTGGCATCCGGAGAAATGAGAAGATTGCTGTT
CACTGCACAGTCCGCGGAGCCAAGGCAGAGGAAATTCTGGAGAAAGGCCTGAAGGTGCGGGAGTATGAGT
TGCGGAAAAATAACTTCTCGGATACTGGAAACTTTGGTTTTGGAATTCAAGAACACATTGACCTGGGCAT
CAAATACGACCCAAGCATTGGGATCTACGGCCTGGACTTCTATGTGGTGCTGGGTAGGCCAGGGTTCAGC
ATCGCAGACAAGAAGCGCAGAACAGGCTGCATTGGGGCCAAACACAGAATCAGCAAGGAGGAGGCCATGC
GCTGGTTCCAGCAGAAGTACGATGGAATCATCCTTCCTGGAAAATAA

Translation (178 aa):
MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAV
HCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFS
IADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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