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Report for CCDS78764.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78764.1 Public Mus musculus 1 Enah 23 108 98 CCDS HistoryNCBI Gene:13800Re-query CCDS DB by CCDS ID:78764.1Re-query CCDS DB by GeneID:13800See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78764.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000193703.5 ENSMUSP00000141462.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193703.5Link to Ensembl Protein Viewer:ENSMUSP00000141462.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193703Re-query CCDS DB by Protein ID:ENSMUSP00000141462
Original member NCBI NM_001083121.2 NP_001076590.1 Updated not alive Link to Nucleotide Sequence:NM_001083121.2Link to Protein Sequence:NP_001076590.1Re-query CCDS DB by Nucleotide ID:NM_001083121Re-query CCDS DB by Protein ID:NP_001076590
Current member NCBI NM_001083121.3 NP_001076590.1 Accepted alive Link to Nucleotide Sequence:NM_001083121.3Link to Protein Sequence:NP_001076590.1Re-query CCDS DB by Nucleotide ID:NM_001083121Re-query CCDS DB by Protein ID:NP_001076590Link to BLAST:NP_001076590.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076590.1 541 Q03173-3 541 100% 0 0

Chromosomal Locations for CCDS 78764.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 181905860 181905897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181906387 181906444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181908298 181908376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181913307 181913373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181917199 181917247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181918258 181918315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181918438 181918583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181919325 181919629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181921658 181921768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181923560 181923840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181930678 181930762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181956394 181956571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181961754 181961919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182019530 182019534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGAGTGAACAGAGTATCTGTCAGGCAAGAGCTGCTGTGATGGTCTATGATGATGCCAATAAGAAGTGGG
TGCCAGCTGGTGGCTCAACTGGGTTCAGCAGAGTACATATATATCACCATACAGGCAACAACACATTCAG
AGTTGTGGGCAGAAAGATTCAAGACCATCAGGTTGTGATAAACTGTGCCATTCCTAAAGGGCTGAAGTAC
AATCAAGCTACACAGACTTTCCACCAATGGAGGGATGCTAGACAGGTGTATGGTCTCAACTTTGGCAGCA
AAGAGGATGCCAATGTCTTCGCAAGTGCCATGATGCATGCCTTAGAAGTGTTAAATTCACAGGAAGCAGG
GCCAACATTGCCTAGACAAAATTCACAGCTACCTGCTCAAGTTCAAAATGGCCCATCCCAAGAAGAGCTG
GAAATCCAGAGAAGGCAACTGCAAGAACAGCAGCGACAGAAGGAACTGGAGAGGGAAAGAATGGAGAGGG
AAAGGTTGGAGAGAGAACGACTAGAACGAGAGAGGCTAGAGAGGGAGCGCCTGGAACAAGAGCAGCTGGA
GCGGCAGCGGCAGGAAAGGGAGCACGTGGAGCGGCTGGAGAGGGAGAGGCTGGAGCGCCTGGAGCGAGAG
AGGCAGGAGCGGGAGCGAGAGCGCCTGGAGCAGCTGGAGCGGGAGCAAGTGGAGTGGGAGCGAGAGCGCA
GAATGTCCAATGCTGCTGCCCCTGCCTCTGCGGAGACCCCTCTAAATCCTGAGCTGGGAGACTCCTCTGC
TTCCGAGCCAGGCTTGCAGGCAGCCTCTCAGCCGGCCGAGTCGCCAACCCCACAGGGCCTTGTCTTGGGA
CCACCTGCACCTCCGCCACCACCCCCTCTCCCATCAGGCCCTGCCTACGCCTCAGCACTTCCTCCTCCCC
CAGGACCCCCTCCACCACCTCCACTGCCATCCACTGGTCCTCCTCCTCCACCCCCTCCACCACCCCCTCT
TCCTAATCAAGCTCCTCCCCCTCCTCCCCCACCTCCTGCCCCTCCCCTCCCCGCATCTGGAATTTTCTCT
GGATCCACGTCAGAAGACAATCGCCCTTTAACTGGACTTGCAGCTGCAATTGCGGGAGCAAAACTTAGGA
AAGTGTCCCGGGTGGAGGATGGCTCTTTCCCAGGTGGAGGGAATACTGGGAGTGTGAGCTTGGCCTCATC
CAAAGCAGACGCTGGGCGTGGGAATGGACCTCTTCCTCTAGGGGGTAGTGGCTTAATGGAAGAAATGAGT
GCCCTGCTGGCCAGGAGGAGAAGAATTGCTGAGAAGGGATCAACAATAGAAACAGAACAAAAGGAAGACA
GAAATGAAGATGCAGAGCCTATAACTGCTAAGGCCCCATCAACAAGTACACCTGAACCAACCAGAAAACC
TTGGGAAAGAACAAACACAATGAACGGCAGTAAGTCACCTGTCATCTCCAGACCCAAATCCACACCTTCA
TCACAGCCAAGTGCCAATGGAGTCCAGACAGAAGGCCTTGACTATGACAGGCTGAAGCAGGACATTTTAG
ATGAGATGAGAAAAGAGCTGGCAAAGCTGAAGGAGGAGCTTATTGACGCAATCAGGCAGGAGCTGAGCAA
GTCGAACACTGCATAA

Translation (541 aa):
MSEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKY
NQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQEAGPTLPRQNSQLPAQVQNGPSQEEL
EIQRRQLQEQQRQKELERERMERERLERERLERERLERERLEQEQLERQRQEREHVERLERERLERLERE
RQERERERLEQLEREQVEWERERRMSNAAAPASAETPLNPELGDSSASEPGLQAASQPAESPTPQGLVLG
PPAPPPPPPLPSGPAYASALPPPPGPPPPPPLPSTGPPPPPPPPPPLPNQAPPPPPPPPAPPLPASGIFS
GSTSEDNRPLTGLAAAIAGAKLRKVSRVEDGSFPGGGNTGSVSLASSKADAGRGNGPLPLGGSGLMEEMS
ALLARRRRIAEKGSTIETEQKEDRNEDAEPITAKAPSTSTPEPTRKPWERTNTMNGSKSPVISRPKSTPS
SQPSANGVQTEGLDYDRLKQDILDEMRKELAKLKEELIDAIRQELSKSNTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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