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Report for CCDS34714.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34714.1 Public Homo sapiens 7 PRKRIP1 24 110 108 CCDS HistoryNCBI Gene:79706Re-query CCDS DB by CCDS ID:34714.1Re-query CCDS DB by GeneID:79706See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34714.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397912.3 ENSP00000381010.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397912.3Link to Ensembl Protein Viewer:ENSP00000381010.3Re-query CCDS DB by Nucleotide ID:ENST00000397912Re-query CCDS DB by Protein ID:ENSP00000381010
Original member Current member EBI ENST00000496391.5 ENSP00000419270.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000496391.5Link to Ensembl Protein Viewer:ENSP00000419270.1Re-query CCDS DB by Nucleotide ID:ENST00000496391Re-query CCDS DB by Protein ID:ENSP00000419270
Original member Current member NCBI NM_024653.4 NP_078929.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024653.4Link to Protein Sequence:NP_078929.1Re-query CCDS DB by Nucleotide ID:NM_024653Re-query CCDS DB by Protein ID:NP_078929Link to BLAST:NP_078929.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078929.1 184 Q9H875-1 184 100% 0 0

Chromosomal Locations for CCDS 34714.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102396412 102396537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102397620 102397698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102399548 102399648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102404598 102404683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102407434 102407498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102425014 102425111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGGCTAGCCCAGCCGCCTCCTCGGTGCGACCACCGAGGCCCAAGAAAGAGCCGCAGACGCTCGTCATCC
CCAAGAATGCGGCGGAGGAGCAGAAGCTCAAGCTGGAGCGGCTCATGAAGAACCCGGACAAAGCAGTTCC
AATTCCAGAGAAAATGAGTGAATGGGCACCTCGACCTCCCCCAGAATTTGTCCGAGATGTCATGGGTTCA
AGTGCTGGGGCCGGCAGTGGAGAGTTCCACGTGTACAGACATCTGCGCCGGAGAGAATATCAGCGACAGG
ACTACATGGATGCCATGGCTGAGAAGCAAAAATTGGATGCAGAGTTTCAGAAAAGACTGGAAAAGAATAA
AATTGCTGCAGAGGAGCAGACCGCAAAGCGCCGGAAGAAGCGCCAGAAGTTAAAAGAGAAGAAATTACTG
GCAAAGAAGATGAAACTTGAACAGAAGAAACAAGAAGGACCCGGTCAGCCCAAGGAGCAGGGGTCCAGCA
GCTCTGCGGAGGCATCTGGAACAGAGGAGGAGGAGGAAGTGCCCAGTTTCACCATGGGGCGATGA

Translation (184 aa):
MASPAASSVRPPRPKKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGS
SAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIAAEEQTAKRRKKRQKLKEKKLL
AKKMKLEQKKQEGPGQPKEQGSSSSAEASGTEEEEEVPSFTMGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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