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Report for CCDS90672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90672.1 Public Mus musculus 9 Klhl18 23 108 98 CCDS HistoryNCBI Gene:270201Re-query CCDS DB by CCDS ID:90672.1Re-query CCDS DB by GeneID:270201See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000198164.4 ENSMUSP00000143634.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198164.4Link to Ensembl Protein Viewer:ENSMUSP00000143634.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198164Re-query CCDS DB by Protein ID:ENSMUSP00000143634
Original member Current member NCBI NM_001360306.1 NP_001347235.1 Accepted alive Link to Nucleotide Sequence:NM_001360306.1Link to Protein Sequence:NP_001347235.1Re-query CCDS DB by Nucleotide ID:NM_001360306Re-query CCDS DB by Protein ID:NP_001347235Link to BLAST:NP_001347235.1

Chromosomal Locations for CCDS 90672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110428631 110429017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110429946 110430057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110432434 110432538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110436011 110436248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110437347 110437483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110438898 110439058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110446674 110446872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110450720 110450860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110455357 110455487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110476466 110476594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGGTGGAGGACGGCGCGGAGGAGCTGGAGGACTTGGTGCATTTCTCCGTGTCGGAGTTGCCTAGTCGCG
GCTACGGCGTCATGGAGGAGATCCGGCGGCAGGGCAAGCTATGCGACGTGACGCTAAAGATTGGGGACCA
CAAGTTCAGTGCTCACCGGATCGTCTTAGCGGCCTCCATCCCGTACTTCCATGCTATGTTTACGAACGAC
ATGATGGAGTGCAAGCAGGATGAGATTGTAATGCAGGGAATGGACCCAAGTGCCCTGGAGGCTCTCATCA
ACTTTGCTTATAATGGCAACCTTGCTATCGACCAGCAGAATGTGCAGTCCCTGCTGATGGGGGCAAGCTT
CCTGCAGCTGCAGAGCATCAAAGATGCTTGCTGCACGTTCCTCCGAGAAAGGCTTCACCCCAAAAATTGC
CTGGGTGTGCGCCAGTTTGCCGAGACGATGATGTGTGCTGTGTTGTACGATGCAGCCAACAGCTTCATCC
ACCAGCACTTTGTAGAGGTGTCTCTGTCCGAAGAGTTCCTGGCCCTGCCCTTGGAAGACGTGCTTGAGCT
GGTGTCCCGGGATGAGCTGAATGTGAAGTCAGAGGAGCAGGTTTTTGAAGCTGCATTGGCCTGGGTCAGG
TATGACCGGGAGCAGAGGGGACCATGCCTGCCCGAGCTGCTGTCCAATATCCGCCTGCCTCTTTGCCGGC
CCCAGTTCTTATCAGATCGAGTGCAGCAAGATGACCTGGTACGGTGCTGTCACAAATGCAGGGACCTGGT
CGATGAAGCAAAGGACTATCATCTGATGCCAGAGCGCCGGCCCCACCTGCCAGCTTTCAGGACTCGGCCC
CGATGCTGCACGTCCATCGCTGGGCTCATCTACGCTGTGGGGGGCCTCAACTCAGCAGCAAATTTTTATG
CAGGTGATTCCCTGAATGTGGTGGAAGTGTTCGACCCTATCGCCAATCGCTGGGAAAAGTGCCATCCCAT
GACAACAGCCCGAAGCCGTGTGGGTGTGGCTGTGGTGAACGGGCTCCTCTATGCTATCGGGGGATATGAT
GGTCAGTTGCGGCTGAGCACCGTGGAGGCCTACAATCCTGAGACGGACACATGGACCCGAGTGGGGAGCA
TGAATAGCAAGCGAAGTGCCATGGGGACAGTCGTGCTGGATGGACAGATCTACGTGTGTGGAGGCTATGA
CGGCAACTCCTCCCTCAACTCTGTGGAGACCTACTCACCTGAGACGGACAAGTGGACAGTGGTGACTCCG
ATGAGCTCAAACCGGAGTGCTGCTGGGGTGACAGTCTTTGAGGGCAGGATATATGTGTCAGGAGGCCACG
ATGGCTTGCAGATCTTCAGCAGTGTGGAACACTACAACCACCACACGGCCACCTGGCACCCGGCAGCCAG
CATGCTCAACAAGCGCTGCCGACACGGAGCCGCCTCCCTGGGAAGCAAGATGTTTGTCTGTGGGGGCTAT
GATGGCTCTGGCTTCCTCAGTATTGCTGAGATGTACAGCTCTGTGGCAGACCAGTGGTGTCTCATAGTAC
CCATGCACACACGCCGGAGCCGGGTCTCCCTCGTGGCCAGCTGTGGGCGCCTCTATGCAGTGGGAGGTTA
CGATGGACAGTCAAACCTAAGCTCAGTGGAGATGTACGACCCAGAGACGGACCGCTGGACATTTATGGCC
CCCATGGCATGCCACGAGGGGGGGGTTGGTGTGGGCTGCATCCCTCTTCTCACCATCTAA

Translation (579 aa):
MVEDGAEELEDLVHFSVSELPSRGYGVMEEIRRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTND
MMECKQDEIVMQGMDPSALEALINFAYNGNLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERLHPKNC
LGVRQFAETMMCAVLYDAANSFIHQHFVEVSLSEEFLALPLEDVLELVSRDELNVKSEEQVFEAALAWVR
YDREQRGPCLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMPERRPHLPAFRTRP
RCCTSIAGLIYAVGGLNSAANFYAGDSLNVVEVFDPIANRWEKCHPMTTARSRVGVAVVNGLLYAIGGYD
GQLRLSTVEAYNPETDTWTRVGSMNSKRSAMGTVVLDGQIYVCGGYDGNSSLNSVETYSPETDKWTVVTP
MSSNRSAAGVTVFEGRIYVSGGHDGLQIFSSVEHYNHHTATWHPAASMLNKRCRHGAASLGSKMFVCGGY
DGSGFLSIAEMYSSVADQWCLIVPMHTRRSRVSLVASCGRLYAVGGYDGQSNLSSVEMYDPETDRWTFMA
PMACHEGGVGVGCIPLLTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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