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Report for CCDS29515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29515.1 Public Mus musculus 19 Fkbp2 23 108 98 CCDS HistoryNCBI Gene:14227Re-query CCDS DB by CCDS ID:29515.1Re-query CCDS DB by GeneID:14227See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29515.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070878.8 ENSMUSP00000066839.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070878.8Link to Ensembl Protein Viewer:ENSMUSP00000066839.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000070878Re-query CCDS DB by Protein ID:ENSMUSP00000066839
Original member Current member EBI ENSMUST00000177752.8 ENSMUSP00000136438.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177752.8Link to Ensembl Protein Viewer:ENSMUSP00000136438.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177752Re-query CCDS DB by Protein ID:ENSMUSP00000136438
Original member Current member NCBI NM_001166368.2 NP_001159840.1 Accepted alive Link to Nucleotide Sequence:NM_001166368.2Link to Protein Sequence:NP_001159840.1Re-query CCDS DB by Nucleotide ID:NM_001166368Re-query CCDS DB by Protein ID:NP_001159840Link to BLAST:NP_001159840.1
Original member Current member NCBI NM_001360286.1 NP_001347215.1 Accepted alive Link to Nucleotide Sequence:NM_001360286.1Link to Protein Sequence:NP_001347215.1Re-query CCDS DB by Nucleotide ID:NM_001360286Re-query CCDS DB by Protein ID:NP_001347215Link to BLAST:NP_001347215.1
Original member Current member NCBI NM_001360288.1 NP_001347217.1 Accepted alive Link to Nucleotide Sequence:NM_001360288.1Link to Protein Sequence:NP_001347217.1Re-query CCDS DB by Nucleotide ID:NM_001360288Re-query CCDS DB by Protein ID:NP_001347217Link to BLAST:NP_001347217.1
Original member Current member NCBI NM_008020.4 NP_032046.1 Accepted alive Link to Nucleotide Sequence:NM_008020.4Link to Protein Sequence:NP_032046.1Re-query CCDS DB by Nucleotide ID:NM_008020Re-query CCDS DB by Protein ID:NP_032046Link to BLAST:NP_032046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159840.1 140 P45878 140 100% 0 0
NP_001347215.1 140 P45878 140 100% 0 0
NP_001347217.1 140 P45878 140 100% 0 0
NP_032046.1 140 P45878 140 100% 0 0

Chromosomal Locations for CCDS 29515.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6977873 6977934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6978011 6978046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6978390 6978436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6978558 6978670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6978973 6979137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGAGGCTGAGCTGGATCCTGACAATACTGTCCATTTGCCTGAGTGCCCTGGCAGCAGCCACGGGGGCCG
AAGGCAAACGGAAGCTGCAGATTGGAGTGAAGAAACGTGTGGACCACTGTCCTATCAAGTCTAGAAAGGG
AGATGTCTTACACATGCACTACACGGGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAG
AACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGGA
TGTGTGAAGGGGAAAAGCGGAAGTTGGTGATCCCATCCGAGCTGGGGTATGGAGAGCGGGGAGCCCCCCC
AAAGATCCCAGGTGGAGCAACCCTGGTGTTTGAGGTGGAGCTGCTCAAGATTGAGAGACGCTCAGAACTG
TAG

Translation (140 aa):
MRLSWILTILSICLSALAAATGAEGKRKLQIGVKKRVDHCPIKSRKGDVLHMHYTGKLEDGTEFDSSLPQ
NQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRSEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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