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Report for CCDS50610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50610.1 Public Mus musculus 2 Hnrnpa3 23 108 98 CCDS HistoryNCBI Gene:229279Re-query CCDS DB by CCDS ID:50610.1Re-query CCDS DB by GeneID:229279See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50610.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111962.7 ENSMUSP00000107593.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111962.7Link to Ensembl Protein Viewer:ENSMUSP00000107593.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111962Re-query CCDS DB by Protein ID:ENSMUSP00000107593
Original member Current member EBI ENSMUST00000164947.8 ENSMUSP00000126069.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164947.8Link to Ensembl Protein Viewer:ENSMUSP00000126069.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164947Re-query CCDS DB by Protein ID:ENSMUSP00000126069
Original member Current member NCBI NM_001359971.1 NP_001346900.1 Accepted alive Link to Nucleotide Sequence:NM_001359971.1Link to Protein Sequence:NP_001346900.1Re-query CCDS DB by Nucleotide ID:NM_001359971Re-query CCDS DB by Protein ID:NP_001346900Link to BLAST:NP_001346900.1
Original member Current member NCBI NM_053263.1 NP_444493.1 Accepted alive Link to Nucleotide Sequence:NM_053263.1Link to Protein Sequence:NP_444493.1Re-query CCDS DB by Nucleotide ID:NM_053263Re-query CCDS DB by Protein ID:NP_444493Link to BLAST:NP_444493.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346900.1 357 Q8BG05-2 357 100% 0 0
NP_444493.1 357 Q8BG05-2 357 100% 0 0

Chromosomal Locations for CCDS 50610.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 75659318 75659323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75661466 75661588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75661671 75661817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75661896 75662106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75662487 75662576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75662661 75662756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75662845 75662925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75663571 75663714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75665028 75665150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 75665234 75665286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGAGGGCCATGATCCAAAGGAACCAGAGCAGCTGAGGAAGCTATTTATTGGTGGTCTGAGCTTTGAAA
CCACAGATGATAGCTTAAGAGAACATTTTGAGAAATGGGGCACACTTACAGACTGTGTGGTAATGAGAGA
TCCCCAAACAAAACGTTCCAGAGGCTTTGGTTTTGTGACCTACTCTTGTGTTGAAGAGGTGGATGCTGCA
ATGTGTGCTCGGCCACACAAGGTTGATGGGCGTGTGGTGGAACCGAAGAGAGCTGTTTCTAGAGAGGATT
CTGTAAAGCCTGGTGCCCATTTAACGGTGAAGAAAATTTTTGTTGGTGGTATTAAAGAGGATACGGAAGA
ATATAACCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAGGTTATGGAAGACAGGCAG
AGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAAAATTGTTGTTC
AGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTC
TGCTGGATCACAGAGAGGTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGT
GGTGGAGGAAACTTTGGTCGTGGAGGAAACTTTGGTGGAAGAGGTGGCTATGGTGGTGGAGGTGGTGGCA
GCAGAGGTAGTTATGGAGGTGGTGATGGTGGATATAATGGATTTGGAGGTGATGGTGGCAACTATGGTGG
TGGTCCTGGTTACAGCAGTAGAGGAGGTTATGGAGGTGGTGGACCAGGATATGGAAACCAGGGTGGTGGA
TATGGTGGTGGAGGAGGAGGCTATGATGGTTACAATGAAGGAGGAAATTTTGGTGGAGGTAACTATGGTG
GTGGTGGAAACTATAATGACTTTGGAAATTATAGTGGACAGCAACAATCAAATTATGGACCCATGAAGGG
GGGCAGTTTTGGTGGAAGAAGCTCAGGCAGTCCCTATGGTGGTGGCTATGGATCTGGAGGTGGAAGTGGT
GGATATGGTAGCAGAAGGTTTTAA

Translation (357 aa):
MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA
MCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ
SGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGG
GGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGG
YGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSG
GYGSRRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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