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Report for CCDS28349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28349.1 Public Mus musculus 16 Vps26c 23 108 98 CCDS HistoryNCBI Gene:13185Re-query CCDS DB by CCDS ID:28349.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28349.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023615.6 ENSMUSP00000023615.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023615.6Link to Ensembl Protein Viewer:ENSMUSP00000023615.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023615Re-query CCDS DB by Protein ID:ENSMUSP00000023615
Original member Current member NCBI NM_007834.3 NP_031860.1 Accepted alive Link to Nucleotide Sequence:NM_007834.3Link to Protein Sequence:NP_031860.1Re-query CCDS DB by Nucleotide ID:NM_007834Re-query CCDS DB by Protein ID:NP_031860Link to BLAST:NP_031860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031860.1 297 O35075 297 100% 0 0

Chromosomal Locations for CCDS 28349.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 94499000 94499082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94501535 94501687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94502082 94502232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94504302 94504376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94505364 94505444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94510738 94510887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94512230 94512373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94526338 94526394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGGGACCACTCTGGACATCAAGATTAAAAGAGCGAATAAAGTGTATCACGCCGGGGAAATGCTCTCTG
GTGTGGTGGTCATCTCTAGCAAGGACTCAGTCCAGCACCAGGGAGTCTCTTTGACAATGGAAGGGACTGT
AAACCTCCAGCTCAGTGCCAAAAGTGTGGGTGTGTTCGAAGCCTTTTACAACTCTGTGAAGCCGATCCAG
ATTATCAACAGCACCATAGACGTGCTGAAGCCAGGAAAGATTCCCAGTGGCAAGACTGAGGTCCCCTTTG
AGTTCCCACTGCTTGTGAAAGGCAGCAAGGTCCTGTATGAGACTTACCACGGCGTGTTTGTCAACATTCA
GTACACACTGCGCTGTGACATGCGGCGGTCCCTGTTGGCCAAGGACCTGACCAAGACCTGTGAATTCATC
GTTCACTCTGCCCCTCAGAAGGGGAAGTTGACCCCAAGTCCTGTTGACTTCACGATCACTCCGGAAACCT
TGCAGAACGTCAAAGAGAGAGCTTCACTTCCCAAATTCTTCATTAGAGGACATCTGAACTCCACTAACTG
CGCTATCACGCAGCCCCTGACAGGAGAGCTGGTGGTGGAACACTCGGATGCTGCTATCCGGAGCATAGAG
CTTCAGTTGGTCCGGGTGGAGACCTGTGGGTGTGCAGAAGGCTATGCACGAGATGCCACAGAGATTCAGA
ATATTCAAATCGCTGATGGGGACATTTGTAGAAACCTTTCTGTTCCCCTGTACATGGTCTTCCCCAGACT
GTTCACCTGTCCAACACTGGAGACCACCAACTTCAAAGTGGAGTTTGAGGTCAATGTGGTGGTCCTCCTT
CATGCTGACCACCTCATCACTGAGAACTTTCCGCTGAAGCTCTGTCGGACATAG

Translation (297 aa):
MGTTLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQ
IINSTIDVLKPGKIPSGKTEVPFEFPLLVKGSKVLYETYHGVFVNIQYTLRCDMRRSLLAKDLTKTCEFI
VHSAPQKGKLTPSPVDFTITPETLQNVKERASLPKFFIRGHLNSTNCAITQPLTGELVVEHSDAAIRSIE
LQLVRVETCGCAEGYARDATEIQNIQIADGDICRNLSVPLYMVFPRLFTCPTLETTNFKVEFEVNVVVLL
HADHLITENFPLKLCRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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