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Report for CCDS28633.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28633.1 Public Mus musculus 17 Daxx 23 108 98 CCDS HistoryNCBI Gene:13163Re-query CCDS DB by CCDS ID:28633.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28633.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079421.14 ENSMUSP00000078390.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079421.14Link to Ensembl Protein Viewer:ENSMUSP00000078390.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000079421Re-query CCDS DB by Protein ID:ENSMUSP00000078390
Original member Current member EBI ENSMUST00000170075.8 ENSMUSP00000128504.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170075.8Link to Ensembl Protein Viewer:ENSMUSP00000128504.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170075Re-query CCDS DB by Protein ID:ENSMUSP00000128504
Original member Current member NCBI NM_001199733.1 NP_001186662.1 Accepted alive Link to Nucleotide Sequence:NM_001199733.1Link to Protein Sequence:NP_001186662.1Re-query CCDS DB by Nucleotide ID:NM_001199733Re-query CCDS DB by Protein ID:NP_001186662Link to BLAST:NP_001186662.1
Original member Current member NCBI NM_001355704.1 NP_001342633.1 Accepted alive Link to Nucleotide Sequence:NM_001355704.1Link to Protein Sequence:NP_001342633.1Re-query CCDS DB by Nucleotide ID:NM_001355704Re-query CCDS DB by Protein ID:NP_001342633Link to BLAST:NP_001342633.1
Original member Current member NCBI NM_007829.4 NP_031855.3 Accepted alive Link to Nucleotide Sequence:NM_007829.4Link to Protein Sequence:NP_031855.3Re-query CCDS DB by Nucleotide ID:NM_007829Re-query CCDS DB by Protein ID:NP_031855Link to BLAST:NP_031855.3

Chromosomal Locations for CCDS 28633.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33910447 33910671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33911238 33912069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33912158 33912369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33912588 33912807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33913273 33913726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33913843 33914062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33915343 33915402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2223 nt):
ATGGCCACCGATGACAGCATCATTGTACTTGATGATGACGATGAAGATGAAGCTGCTGCTCAACCAGGGC
CCTCCAACCTACCCCCCAATCCTGCCTCAACAGGACCTGGTCCTGGCCTGTCTCAACAGGCCACTGGTCT
CTCCGAGCCCCGTGTGGATGGAGGGAGCAGTAACTCCGGTAGTAGGAAGTGCTACAAGTTGGATAATGAG
AAGCTCTTTGAAGAGTTCCTTGAACTGTGTAAGACGGAGACATCAGACCACCCTGAGGTGGTTCCGTTCC
TCCACAAACTGCAGCAGCGTGCCCAGTCTGTGTTTCTGGCCTCTGCAGAGTTCTGCAACATCCTCTCCAG
GGTTCTGGCTCGGTCTCGGAAGCGGCCCGCTAAGATCTATGTGTACATTAACGAGCTCTGCACTGTTCTT
AAAGCTCACTCCATCAAGAAGAAGTTGAACTTAGCTCCTGCAGCCTCAACGACCAGTGAGGCGTCGGGCC
CTAACCCTCCCACAGAGCCCCCCTCTGACCTTACAAACACTGAAAACACTGCCTCTGAGGCCTCAAGGAC
TCGCGGTTCCCGGAGGCAGATCCAGCGCCTGGAGCAGCTGCTGGCACTGTACGTAGCCGAGATTCGGCGG
CTGCAGGAGAAGGAGTTGGACCTGTCAGAGCTGGATGACCCAGACTCCTCGTATTTGCAGGAGGCCCGCT
TGAAGAGGAAGTTGATCCGCCTCTTCGGGCGGTTGTGTGAGTTGAAGGACTGCTCTTCTCTGACGGGGCG
GGTCATAGAGCAGCGAATTCCGTACCGAGGCACCCGGTACCCAGAGGTCAACAGGCGCATTGAACGGCTC
ATTAACAAGCCGGGGCTGGACACCTTCCCCGATTATGGAGATGTGCTGAGAGCCGTGGAGAAGGCGGCGA
CCCGGCACAGCCTGGGCCTTCCCAGACAGCAGCTTCAGCTCCTGGCTCAGGATGCCTTCCGGGACGTGGG
CGTCAGGTTACAGGAGCGGCGCCACCTGGATCTCATCTACAACTTTGGCTGTCACCTCACAGATGACTAT
AGGCCAGGCGTTGACCCCGCACTGTCTGATCCCACATTGGCTCGCCGCCTTCGGGAAAATCGAACCTTGG
CCATGAACCGGCTGGATGAGGTCATCTCCAAGTATGCAATGATGCAAGACAAGACTGAGGAGGGCGAGAG
ACAGAAGAGACGAGCCCGGCTCTTAGGCACCGCCCCCCAACCTTCAGACCCCCCCAAAGCCTCCTCGGAA
TCTGGTGAGGGTCCTAGCGGAATGGCATCCCAGGAGTGCCCTACTACCTCCAAAGCTGAGACTGATGATG
ACGATGATGACGATGATGATGACGACGACGAAGATAACGAGGAAAGTGAGGAGGAGGAGGAGGAGGAAGA
GGAGGAGAAAGAGGCTACTGAAGATGAAGATGAGGATCTAGAACAGTTGCAGGAAGATCAGGGGGGTGAT
GAAGAAGAGGAAGGAGGAGATAATGAAGGAAATGAGAGTCCCACATCGCCTTCAGACTTTTTCCATAGAA
GGAATTCAGAGCCTGCAGAAGGGCTCAGGACCCCCGAGGGGCAGCAAAAGAGAGGACTGACAGAGACCCC
AGCATCCCCGCCAGGGGCATCCCTGGACCCTCCCAGCACTGACGCTGAGAGCAGTGGAGAGCAGCTCCTC
GAGCCGCTCCTGGGAGACGAGAGTCCTGTGTCCCAGCTCGCTGAGCTAGAGATGGAAGCTTTGCCTGAGG
AAAGGGACATTTCCTCCTCCAGGAAAAAGTCGGAAGATTCCCTCCCCACCATCTTGGAAAATGGGGCAGC
TGTGGTTACCTCTACATCTGTCAATGGGCGTGTCTCTTCTCACACTTGGAGAGATGCCAGTCCCCCCAGC
AAGAGATTTCGGAAGGAAAAGAAGCAACTGGGCTCTGGACTGTTAGGAAACAGCTATATAAAAGAACCGA
TGGCACAGCAGGACAGTGGGCAGAACACAAGTGTCCAGCCTATGCCATCCCCCCCCTTGGCCTCTGTGGC
TTCTGTCGCTGATTCCTCCACAAGGGTGGACTCTCCCAGCCATGAACTGGTGACCAGCTCTCTGTGCAGC
CCTTCTCCATCCCTGCTTCTCCAGACACCCCAGGCTCAGTCTCTCCGGCAGTGTATTTATAAGACCAGTG
TGGCCACACAGTGCGACCCGGAGGAGATCATCGTGCTTTCAGACTCTGATTAG

Translation (740 aa):
MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSSNSGSRKCYKLDNE
KLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSVFLASAEFCNILSRVLARSRKRPAKIYVYINELCTVL
KAHSIKKKLNLAPAASTTSEASGPNPPTEPPSDLTNTENTASEASRTRGSRRQIQRLEQLLALYVAEIRR
LQEKELDLSELDDPDSSYLQEARLKRKLIRLFGRLCELKDCSSLTGRVIEQRIPYRGTRYPEVNRRIERL
INKPGLDTFPDYGDVLRAVEKAATRHSLGLPRQQLQLLAQDAFRDVGVRLQERRHLDLIYNFGCHLTDDY
RPGVDPALSDPTLARRLRENRTLAMNRLDEVISKYAMMQDKTEEGERQKRRARLLGTAPQPSDPPKASSE
SGEGPSGMASQECPTTSKAETDDDDDDDDDDDDEDNEESEEEEEEEEEEKEATEDEDEDLEQLQEDQGGD
EEEEGGDNEGNESPTSPSDFFHRRNSEPAEGLRTPEGQQKRGLTETPASPPGASLDPPSTDAESSGEQLL
EPLLGDESPVSQLAELEMEALPEERDISSSRKKSEDSLPTILENGAAVVTSTSVNGRVSSHTWRDASPPS
KRFRKEKKQLGSGLLGNSYIKEPMAQQDSGQNTSVQPMPSPPLASVASVADSSTRVDSPSHELVTSSLCS
PSPSLLLQTPQAQSLRQCIYKTSVATQCDPEEIIVLSDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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