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Report for CCDS19871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19871.1 Public Mus musculus 5 Gpr12 23 108 98 CCDS HistoryNCBI Gene:14738Re-query CCDS DB by CCDS ID:19871.1Re-query CCDS DB by GeneID:14738See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19871.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036211.7 ENSMUSP00000038245.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036211.7Link to Ensembl Protein Viewer:ENSMUSP00000038245.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036211Re-query CCDS DB by Protein ID:ENSMUSP00000038245
Original member Current member EBI ENSMUST00000197431.1 ENSMUSP00000142889.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197431.1Link to Ensembl Protein Viewer:ENSMUSP00000142889.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197431Re-query CCDS DB by Protein ID:ENSMUSP00000142889
Original member Current member NCBI NM_001010941.2 NP_001010941.1 Accepted alive Link to Nucleotide Sequence:NM_001010941.2Link to Protein Sequence:NP_001010941.1Re-query CCDS DB by Nucleotide ID:NM_001010941Re-query CCDS DB by Protein ID:NP_001010941Link to BLAST:NP_001010941.1
Original member Current member NCBI NM_001359055.1 NP_001345984.1 Accepted alive Link to Nucleotide Sequence:NM_001359055.1Link to Protein Sequence:NP_001345984.1Re-query CCDS DB by Nucleotide ID:NM_001359055Re-query CCDS DB by Protein ID:NP_001345984Link to BLAST:NP_001345984.1
Original member Current member NCBI NM_001359056.1 NP_001345985.1 Accepted alive Link to Nucleotide Sequence:NM_001359056.1Link to Protein Sequence:NP_001345985.1Re-query CCDS DB by Nucleotide ID:NM_001359056Re-query CCDS DB by Protein ID:NP_001345985Link to BLAST:NP_001345985.1
Original member Current member NCBI NM_001359057.1 NP_001345986.1 Accepted alive Link to Nucleotide Sequence:NM_001359057.1Link to Protein Sequence:NP_001345986.1Re-query CCDS DB by Nucleotide ID:NM_001359057Re-query CCDS DB by Protein ID:NP_001345986Link to BLAST:NP_001345986.1
Original member Current member NCBI NM_008151.3 NP_032177.1 Accepted alive Link to Nucleotide Sequence:NM_008151.3Link to Protein Sequence:NP_032177.1Re-query CCDS DB by Nucleotide ID:NM_008151Re-query CCDS DB by Protein ID:NP_032177Link to BLAST:NP_032177.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010941.1 334 P35412 334 100% 0 0
NP_001345984.1 334 P35412 334 100% 0 0
NP_001345985.1 334 P35412 334 100% 0 0
NP_001345986.1 334 P35412 334 100% 0 0
NP_032177.1 334 P35412 334 100% 0 0

Chromosomal Locations for CCDS 19871.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 146583106 146584110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGAACGAAGACCCGAAGGTCAATTTAAGCGGGCTGCCTCGGGACTGTATAGATGCCGGTGCTCCAGAGA
ACATCTCAGCCGCTGTCCCCTCCCAGGGCTCTGTTGCGGAGTCAGAACCCGAGCTCGTTGTCAACCCCTG
GGACATTGTCTTGTGCAGCTCAGGAACCCTCATCTGCTGTGAAAATGCCGTTGTGGTCCTTATCATCTTC
CACAGCCCCAGCCTGCGAGCCCCCATGTTCCTACTGATAGGCAGCCTGGCTCTTGCAGACCTGCTGGCTG
GCCTGGGACTCATCATCAATTTTGTTTTTGCGTACCTGCTTCAGTCAGAAGCCACCAAGCTGGTCACCAT
CGGACTCATTGTCGCCTCTTTCTCTGCCTCTGTCTGCAGTTTGCTGGCTATTACTGTGGACCGCTACCTC
TCGCTATATTACGCCCTGACGTACCACTCCGAGAGGACCGTCACCTTTACCTATGTCATGCTAGTGATGC
TCTGGGGAACCTCCATCTGCCTGGGGCTGCTGCCCGTCATGGGCTGGAACTGCTTGAGGGACGAGTCCAC
CTGCAGCGTGGTCAGACCTCTCACTAAGAACAACGCTGCCATCCTCTCCATCTCCTTCCTCTTCATGTTT
GCTCTGATGCTTCAGCTCTACATCCAGATTTGTAAGATTGTGATGAGGCACGCCCATCAGATAGCCCTGC
AGCACCACTTCCTGGCTACATCGCACTATGTGACTACCCGGAAAGGGGTCTCGACCCTGGCTCTCATCCT
AGGGACCTTTGCTGCCTGCTGGATGCCTTTCACCCTCTATTCCTTGATCGCCGATTACACCTACCCTTCG
ATCTATACCTATGCCACCCTCCTGCCCGCCACCTACAATTCCATCATCAACCCTGTCATTTACGCTTTCA
GAAACCAAGAGATCCAGAAAGCCCTCTGCCTCATTTGCTGTGGGTGCATCCCTTCCTCGCTGTCTCAGAG
AGCTCGGTCTCCCAGCGATGTGTAG

Translation (334 aa):
MNEDPKVNLSGLPRDCIDAGAPENISAAVPSQGSVAESEPELVVNPWDIVLCSSGTLICCENAVVVLIIF
HSPSLRAPMFLLIGSLALADLLAGLGLIINFVFAYLLQSEATKLVTIGLIVASFSASVCSLLAITVDRYL
SLYYALTYHSERTVTFTYVMLVMLWGTSICLGLLPVMGWNCLRDESTCSVVRPLTKNNAAILSISFLFMF
ALMLQLYIQICKIVMRHAHQIALQHHFLATSHYVTTRKGVSTLALILGTFAACWMPFTLYSLIADYTYPS
IYTYATLLPATYNSIINPVIYAFRNQEIQKALCLICCGCIPSSLSQRARSPSDV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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