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Report for CCDS24218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24218.1 Public Mus musculus 10 Slc16a7 23 108 98 CCDS HistoryNCBI Gene:20503Re-query CCDS DB by CCDS ID:24218.1Re-query CCDS DB by GeneID:20503See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24218.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063318.9 ENSMUSP00000065433.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063318.9Link to Ensembl Protein Viewer:ENSMUSP00000065433.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000063318Re-query CCDS DB by Protein ID:ENSMUSP00000065433
Original member Current member EBI ENSMUST00000105257.3 ENSMUSP00000100892.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105257.3Link to Ensembl Protein Viewer:ENSMUSP00000100892.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105257Re-query CCDS DB by Protein ID:ENSMUSP00000100892
Original member Current member EBI ENSMUST00000210780.1 ENSMUSP00000147560.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210780.1Link to Ensembl Protein Viewer:ENSMUSP00000147560.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210780Re-query CCDS DB by Protein ID:ENSMUSP00000147560
Original member Current member EBI ENSMUST00000211781.1 ENSMUSP00000147968.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211781.1Link to Ensembl Protein Viewer:ENSMUSP00000147968.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211781Re-query CCDS DB by Protein ID:ENSMUSP00000147968
Original member NCBI NM_001358496.1 NP_001345425.1 Updated not alive Link to Nucleotide Sequence:NM_001358496.1Link to Protein Sequence:NP_001345425.1Re-query CCDS DB by Nucleotide ID:NM_001358496Re-query CCDS DB by Protein ID:NP_001345425
Current member NCBI NM_001358496.2 NP_001345425.1 Accepted alive Link to Nucleotide Sequence:NM_001358496.2Link to Protein Sequence:NP_001345425.1Re-query CCDS DB by Nucleotide ID:NM_001358496Re-query CCDS DB by Protein ID:NP_001345425Link to BLAST:NP_001345425.1
Original member NCBI NM_001358915.1 NP_001345844.1 Updated not alive Link to Nucleotide Sequence:NM_001358915.1Link to Protein Sequence:NP_001345844.1Re-query CCDS DB by Nucleotide ID:NM_001358915Re-query CCDS DB by Protein ID:NP_001345844
Current member NCBI NM_001358915.2 NP_001345844.1 Accepted alive Link to Nucleotide Sequence:NM_001358915.2Link to Protein Sequence:NP_001345844.1Re-query CCDS DB by Nucleotide ID:NM_001358915Re-query CCDS DB by Protein ID:NP_001345844Link to BLAST:NP_001345844.1
Original member NCBI NM_011391.2 NP_035521.1 Updated not alive Link to Nucleotide Sequence:NM_011391.2Link to Protein Sequence:NP_035521.1Re-query CCDS DB by Nucleotide ID:NM_011391Re-query CCDS DB by Protein ID:NP_035521
Current member NCBI NM_011391.3 NP_035521.1 Accepted alive Link to Nucleotide Sequence:NM_011391.3Link to Protein Sequence:NP_035521.1Re-query CCDS DB by Nucleotide ID:NM_011391Re-query CCDS DB by Protein ID:NP_035521Link to BLAST:NP_035521.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345425.1 484 O70451 484 100% 0 0
NP_001345844.1 484 O70451 484 100% 0 0
NP_035521.1 484 O70451 484 100% 0 0

Chromosomal Locations for CCDS 24218.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 125228012 125228289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125230592 125231404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125233442 125233585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125294595 125294814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGCCATCAGAGCCTTCCGCGCCGCTTCCACAACCACTTCCTCCCGACGGAGGGTGGGGCTGGGTCGTAG
TCTGTGCGTCCTTTATCTCCATTGGATTTTCATATGCCTTCCCCAAAGCTGTCACAGTATTCTTCAAAGA
CATCCAGGAAATATTCAACACCACCTCCAGTCAGATCGCTTGGATATCGTCCATCATGCTAGCTGTCATG
TATGCGGGAGGTCCCATCAGTAGTGTGTTGGTGAATAACTATGGCAGCCGGCCTGTGGTGATAGTGGGAG
GACTATTATGCTGCATTGGAATGATCTTGGCTTCTTACAGCAACAGCGTGATAGAGCTTTATCTCACCGT
TGGCTTCATTGGAGGTTTAGGATTAGCATTCAACCTGCAACCAGCCTTAACAATAATTGGAAAATACTTC
TATAGAAGACGACCACTTGCAAATGGCTGCGCCATGGCTGGAAGTCCTGTTTTCTTAAGCACACTGGCTC
CTTTCAATCAGTACCTATTTAACAACTATGGCTGGAAGGGGAGTTTTTTGATTTTGGGAGGTATATTTTT
GCACTCCTGTGTGGCTGGGTGCCTCATGAGACCTGTTGGGCCAAGTCCAAATACTAAGAAGTCTAAAAGT
AAGGTTGGCTCAAGACATGATTCAACTCTGAAGAAAGCCAGTAAGGTATCAACAGCACAAAAGGTTAATA
GGTTTTTAGATTTCAGCCTTTTTATGCATAGAGGATTTTTGATCTACCTATCTGGAAACGTCATATTGTT
TTTAGGGATTTTTGCCCCTATTATATTCTTGGCTCAGTACGCTAAACACATAGGAGTGGATGACTATAAC
TCAGCTTTTTTACTGTCTGTGATGGCTTTTATTGATATGTTTGCTCGGCCTTCTGTAGGATTAATAGCCA
ACACTAGCTTAATCCGTCCACGAATCCAGTACCTCTTCAGCTCTGCAATCATCTTTACTGGCATATGCCA
TCTCTTATGCCCCCTAGCAACTACCTACTCAGCTTTGGTGGTCTACGTTGTATTTTTTGGATTGGGATTT
GGAAGTATTAGCAGTCTCCTCTTTGAATGCCTTATGGACATTGTTGGAGCTACCAGGTTCTCCAGTGCTG
TGGGACTCACAACAATCGTGGAGTGTTGTCCAGTTCTTTTCGGCCCTCCTCTGGCTGGTAAATTGCTTGA
TATAACTGGAGAATATAAATACCTGTACATAGCCAGCGGAACAGTCGTGTTAGTATCAGGTACTTACCTC
CTGATTGGCAATGCTATAAACTATAGACTTCTCGACAAGGAAAGGAAGAGAGAGAAGGCAAAGAAGAAGA
AGTCAGCTTCACACGCGTCCAGAGAAATGGAGGCCCTGAACAGATCTAAACAGGACGAAGTTACTGTCAA
AGCTTCAAACGCACACAATCCTCCCTCAGACAGGGACAAAGAGAGTAATATTTAA

Translation (484 aa):
MPSEPSAPLPQPLPPDGGWGWVVVCASFISIGFSYAFPKAVTVFFKDIQEIFNTTSSQIAWISSIMLAVM
YAGGPISSVLVNNYGSRPVVIVGGLLCCIGMILASYSNSVIELYLTVGFIGGLGLAFNLQPALTIIGKYF
YRRRPLANGCAMAGSPVFLSTLAPFNQYLFNNYGWKGSFLILGGIFLHSCVAGCLMRPVGPSPNTKKSKS
KVGSRHDSTLKKASKVSTAQKVNRFLDFSLFMHRGFLIYLSGNVILFLGIFAPIIFLAQYAKHIGVDDYN
SAFLLSVMAFIDMFARPSVGLIANTSLIRPRIQYLFSSAIIFTGICHLLCPLATTYSALVVYVVFFGLGF
GSISSLLFECLMDIVGATRFSSAVGLTTIVECCPVLFGPPLAGKLLDITGEYKYLYIASGTVVLVSGTYL
LIGNAINYRLLDKERKREKAKKKKSASHASREMEALNRSKQDEVTVKASNAHNPPSDRDKESNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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