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Report for CCDS17615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17615.1 Public Mus musculus 3 Ctsk 23 108 98 CCDS HistoryNCBI Gene:13038Re-query CCDS DB by CCDS ID:17615.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17615.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015664.4 ENSMUSP00000015664.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015664.4Link to Ensembl Protein Viewer:ENSMUSP00000015664.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000015664Re-query CCDS DB by Protein ID:ENSMUSP00000015664
Original member Current member NCBI NM_007802.4 NP_031828.2 Accepted alive Link to Nucleotide Sequence:NM_007802.4Link to Protein Sequence:NP_031828.2Re-query CCDS DB by Nucleotide ID:NM_007802Re-query CCDS DB by Protein ID:NP_031828Link to BLAST:NP_031828.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031828.2 329 P55097 329 100% 0 0

Chromosomal Locations for CCDS 17615.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95500835 95500954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95501347 95501469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95501551 95501706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95502582 95502800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95506562 95506727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95506913 95507018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95508823 95508922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGTGGGTGTTCAAGTTTCTGCTGCTACCCATGGTGAGCTTTGCTCTGTCTCCGGAGGAAATGCTGGACA
CCCAGTGGGAGCTATGGAAGAAGACTCACCAGAAGCAGTATAACAGCAAGGTGGATGAAATCTCTCGGCG
TTTAATTTGGGAGAAAAACCTGAAGCAAATCTCTGCCCATAACCTGGAGGCCTCTCTTGGTGTCCATACA
TATGAACTGGCCATGAACCACTTGGGAGACATGACCAGTGAAGAAGTGGTTCAGAAGATGACGGGACTCA
GAATACCTCCCTCTCGATCCTACAGTAATGACACTCTCTATACCCCAGAGTGGGAAGGCAGGGTCCCAGA
CTCCATCGACTATCGAAAGAAAGGATACGTTACTCCAGTCAAGAACCAGGGCCAGTGTGGTTCCTGTTGG
GCTTTCAGCTCTGCCGGGGCCCTGGAGGGCCAACTCAAGAAGAAAACTGGTAAACTCTTAGCTCTGAGTC
CCCAGAATCTTGTGGACTGTGTGACTGAGAATTATGGCTGTGGAGGCGGCTATATGACCACTGCCTTCCA
ATACGTGCAGCAGAACGGAGGCATTGACTCTGAAGATGCTTACCCATATGTGGGCCAGGATGAAAGTTGT
ATGTATAACGCCACGGCAAAGGCAGCTAAATGCAGAGGGTACAGAGAGATTCCTGTGGGGAACGAGAAAG
CCCTGAAGAGAGCAGTGGCGCGGGTAGGACCCATCTCTGTGTCCATCGATGCAAGCTTGGCATCTTTCCA
GTTTTACAGCAGAGGTGTGTACTATGATGAAAATTGTGACCGTGATAATGTGAACCATGCAGTGTTGGTG
GTGGGCTATGGCACCCAGAAGGGAAGCAAGCACTGGATAATTAAAAACAGCTGGGGAGAGAGCTGGGGAA
ACAAAGGATATGCTCTCTTGGCTCGGAATAAGAACAACGCCTGCGGCATTACCAACATGGCCAGCTTCCC
CAAGATGTGA

Translation (329 aa):
MWVFKFLLLPMVSFALSPEEMLDTQWELWKKTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEASLGVHT
YELAMNHLGDMTSEEVVQKMTGLRIPPSRSYSNDTLYTPEWEGRVPDSIDYRKKGYVTPVKNQGQCGSCW
AFSSAGALEGQLKKKTGKLLALSPQNLVDCVTENYGCGGGYMTTAFQYVQQNGGIDSEDAYPYVGQDESC
MYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRDNVNHAVLV
VGYGTQKGSKHWIIKNSWGESWGNKGYALLARNKNNACGITNMASFPKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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