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Report for CCDS23228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23228.1 Public Mus musculus 9 Csk 23 108 98 CCDS HistoryNCBI Gene:12988Re-query CCDS DB by CCDS ID:23228.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034863.7 ENSMUSP00000034863.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034863.7Link to Ensembl Protein Viewer:ENSMUSP00000034863.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034863Re-query CCDS DB by Protein ID:ENSMUSP00000034863
Original member Current member EBI ENSMUST00000215396.1 ENSMUSP00000150590.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215396.1Link to Ensembl Protein Viewer:ENSMUSP00000150590.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215396Re-query CCDS DB by Protein ID:ENSMUSP00000150590
Original member Current member EBI ENSMUST00000217314.1 ENSMUSP00000150984.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217314.1Link to Ensembl Protein Viewer:ENSMUSP00000150984.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217314Re-query CCDS DB by Protein ID:ENSMUSP00000150984
Original member NCBI NM_001304761.1 NP_001291690.1 Updated not alive Link to Nucleotide Sequence:NM_001304761.1Link to Protein Sequence:NP_001291690.1Re-query CCDS DB by Nucleotide ID:NM_001304761Re-query CCDS DB by Protein ID:NP_001291690
Current member NCBI NM_001304761.2 NP_001291690.1 Accepted alive Link to Nucleotide Sequence:NM_001304761.2Link to Protein Sequence:NP_001291690.1Re-query CCDS DB by Nucleotide ID:NM_001304761Re-query CCDS DB by Protein ID:NP_001291690Link to BLAST:NP_001291690.1
Original member NCBI NM_007783.3 NP_031809.2 Updated not alive Link to Nucleotide Sequence:NM_007783.3Link to Protein Sequence:NP_031809.2Re-query CCDS DB by Nucleotide ID:NM_007783Re-query CCDS DB by Protein ID:NP_031809
Current member NCBI NM_007783.4 NP_031809.2 Accepted alive Link to Nucleotide Sequence:NM_007783.4Link to Protein Sequence:NP_031809.2Re-query CCDS DB by Nucleotide ID:NM_007783Re-query CCDS DB by Protein ID:NP_031809Link to BLAST:NP_031809.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291690.1 450 P41241 450 100% 0 0
NP_031809.2 450 P41241 450 100% 0 0

Chromosomal Locations for CCDS 23228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57627321 57627503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57627717 57627803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57627878 57628073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57628177 57628250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57628653 57628743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57628821 57628920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57629001 57629066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57629260 57629353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57630168 57630387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57630680 57630792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57630895 57631008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57631367 57631381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGTCGGCAATACAGGCCGCCTGGCCATCCGGTACAGAATGTATTGCCAAGTACAACTTCCATGGCACTG
CTGAGCAAGACCTTCCCTTCTGCAAAGGAGATGTGCTCACCATCGTGGCTGTCACCAAGGACCCCAACTG
GTACAAAGCCAAAAACAAAGTGGGCCGTGAGGGCATCATCCCAGCCAACTATGTCCAGAAGCGTGAGGGT
GTGAAGGCAGGCACCAAACTCAGCCTTATGCCCTGGTTCCACGGCAAGATCACACGGGAGCAGGCCGAGC
GGCTTCTTTACCCACCAGAGACAGGCCTGTTCCTCGTGCGGGAAAGCACCAACTACCCTGGAGACTACAC
ACTGTGTGTGAGCTGTGAGGGCAAGGTGGAGCACTACCGCATCATGTATCATGCGAGCAAGCTGAGCATT
GATGAGGAGGTGTACTTTGAGAACCTCATGCAGCTGGTGGAGCACTACACCACAGATGCCGATGGACTCT
GCACTCGCCTCATCAAACCAAAGGTCATGGAGGGCACCGTGGCGGCCCAGGATGAGTTCTACCGCAGTGG
CTGGGCACTGAACATGAAGGAACTGAAGCTGCTACAGACAATAGGGAAGGGGGAGTTTGGAGATGTGATG
CTGGGGGATTACCGGGGCAACAAAGTTGCAGTCAAGTGCATCAAGAATGACGCAACTGCCCAGGCCTTCC
TGGCTGAAGCCTCCGTCATGACGCAACTTCGGCACAGCAACCTCGTCCAGCTGCTGGGTGTGATTGTGGA
GGAGAAGGGTGGGCTCTACATCGTCACAGAGTACATGGCCAAGGGGAGTTTGGTGGACTATCTTCGATCA
CGTGGTCGTTCGGTGCTAGGTGGAGACTGTCTCCTCAAATTCTCATTAGACGTCTGTGAAGCCATGGAGT
ACCTGGAGGGTAACAATTTTGTGCACCGGGACTTGGCTGCCCGGAATGTGCTGGTGTCTGAAGACAACGT
GGCCAAAGTCAGTGACTTTGGCCTCACTAAGGAAGCCTCCAGCACTCAGGACACAGGCAAGCTGCCAGTC
AAATGGACAGCGCCTGAAGCCTTGAGAGAGAAGAAATTTTCCACCAAGTCTGATGTGTGGAGTTTCGGAA
TCCTTCTCTGGGAAATCTATTCCTTCGGGCGAGTGCCTTACCCAAGAATTCCCCTGAAGGACGTCGTCCC
TCGGGTGGAAAAGGGCTATAAGATGGACGCTCCGGATGGCTGCCCGCCCGCAGTCTACGAGGTGATGAAG
AACTGCTGGCACCTGGATGCTGCCACACGGCCCACGTTTTTGCAGCTTCGGGAACAGCTCGAGCACATCA
AGACCCATGAGCTGCACCTGTGA

Translation (450 aa):
MSAIQAAWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG
VKAGTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSI
DEEVYFENLMQLVEHYTTDADGLCTRLIKPKVMEGTVAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVM
LGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRS
RGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV
KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMK
NCWHLDAATRPTFLQLREQLEHIKTHELHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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