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Report for CCDS88967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88967.1 Public Mus musculus 16 Scaf4 23 108 98 CCDS HistoryNCBI Gene:224432Re-query CCDS DB by CCDS ID:88967.1Re-query CCDS DB by GeneID:224432See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88967.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000232371.1 ENSMUSP00000156174.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232371.1Link to Ensembl Protein Viewer:ENSMUSP00000156174.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232371Re-query CCDS DB by Protein ID:ENSMUSP00000156174
Original member NCBI NM_001358402.1 NP_001345331.1 Updated not alive Link to Nucleotide Sequence:NM_001358402.1Link to Protein Sequence:NP_001345331.1Re-query CCDS DB by Nucleotide ID:NM_001358402Re-query CCDS DB by Protein ID:NP_001345331
Current member NCBI NM_001358402.2 NP_001345331.1 Accepted alive Link to Nucleotide Sequence:NM_001358402.2Link to Protein Sequence:NP_001345331.1Re-query CCDS DB by Nucleotide ID:NM_001358402Re-query CCDS DB by Protein ID:NP_001345331Link to BLAST:NP_001345331.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345331.1 1184 Q7TSH6-2 1184 100% 0 0

Chromosomal Locations for CCDS 88967.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 90229298 90230244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90242527 90242652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90242872 90242958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90243044 90243209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90244210 90244367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90245381 90245537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90247170 90247283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90247645 90247745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90248513 90248703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90249639 90249712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90250054 90250437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90251875 90251983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90252257 90252450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90257253 90257402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90257982 90258121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90258711 90258846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90260141 90260302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90262174 90262218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90263093 90263176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90284003 90284032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3555 nt):
ATGGACGCCGTCAACGCCTTCAACCAGGAGCTCTTCTCACTTATGGATATGAAGCCTCCCATCTCTAGAG
CCAAGATGATTCTCATTACTAAAGCTGCTATCAAAGCTATTAAGCTTTATAAGCACGTTGTTCAAATAGT
AGAAAAGTTCATCAAAAAGTGTAAGCCAGAATATAAGGTTCCAGGCCTGTATGTCATCGACTCCATCGTG
AGACAGTCTCGGCACCAGTTTGGAACTGATAAAGATGTTTTTGGGCCAAGATTCTCTAAAAATATAACTG
CTACATTCCAGTATTTATATCTTTGTCCATCTGAAGATAAGAGTAAAATAGTTCGTGTGCTAAATCTTTG
GCAAAAAAATGGAGTGTTCAAAATTGAAATTATTCAGCCTCTTTTGGACATGGCAGCAGGAACCAGTAAT
GCTGCTCCAGTAGCAGAAAATGTCACCAACAATGAAGGCTCACCTCCACCCCCAGTAAAAATCTCTTCTG
AACTTGCACAAGCTCCCACAAATTCCATGCCTACTGTAGCCCAGCTGCCCAGCTCCGATGCCTTTGCTGC
TGTGGCTCAGCTGTTCCAGACAACTCAAGGCCAGCAGCTTCAGCAGATCCTTCAGACTTTTCAACAGCCT
CCACAACCACAGTCTCCCGCCCTTGACAGTGCTGTGATGGCTCAGGTTCAGGCTATCACAGCTCAGTTAA
AGACAGCTCCTACACAGCCACCCGAGCAAAAAACTGCATTTGACAAGAAGCTGCTTGATAGATTCGATTA
CGATGACGAGCCAGAAGCTGTGGAAGACTCAAAGAAAGAGGATGCTGCAGCCATCAGCACCGCAGCCCTT
GCCACGGCTGCGCCTCCTGCACCCACTGCAGCCACACCTGCTGTTGCCACGGCTGTGCCTGTGCCCTCTG
CTACCTCTCCCCCTCCTCCACAGACCCCATTTGGGTACCCTGGAGATGGCGTGCAGCAGCCAGCATACAC
ACAGCATCAAAGTATGGACCAGTTTCAGCCTCGAATGATGCCAATACAGCAGGATACGATGCACCATCAG
GTTCCACTTCCTCCTAATGGACAGATGCCAGGATTTGGGCTTCTTTCTGCACCACCTCCATTTCCTCCCA
TGCCTCAGCCGGGGATGCCGCAGCCTGGGATGGCTCAGCCGGGATTGGCACAGCCGGGGATGGCTCAGCC
TACAATGCCACAGCCAGGGATGCCTCAGCCAGGGATGCCTCAGCCTGGGATGGCTCAGCCGGGATTGGCA
CAGCCGGGGATGGCTCAGCCTGGGATGCCTCAGCCTGCCATGCCTCAGCCTGCCATGCCTCAGCCGGGGA
TGGCTCAGCCTGGGGTTTCTCCAGCTCCACCAGTACAGCCAACTTTCCAATCAACTTTTCAGCCACAAAA
TGAACCCCATTCACAAAAACCACATCAGCAGGTAGAAATGGAAGTAGAGCAGCCTTGTGTTACAGAGGTT
AAGCGGCATGTGCCCGAGAGCAGAAAGTCGAGATCCAGGTCACCAAAAAGGAGAAGATCTAGGTCTGGCT
CTAGGTCTCGGAGATCCCGCCACCGTCGCTCTCGGTCTCGGTCCAGGGACAGGCGCCGACACTCACCTCG
CTCTCGATCTCAAGAAAGACGGGATCGAGAAAAAGAGAGGGAACGGCGGCAGAAAGGCCTCCCTCAGATC
AAGTCAGAAACTGCAAGTGTTTGTAGTACCACACTGTGGGTGGGACAACTGGACAAAAGGACTACTCAGC
AGGATGTTGCCAGTCTCTTAGAAGAGTTTGGTCCAATTGAATCGATTAATATGATTCCTCCCAGGGGCTG
TGCCTACATCGTCATGGTTCATAGACAAGATGCATACCGTGCCCTGCAGAAACTGAGCCGAGGAAACTAC
AAGGTGAACCAGAAATCCATAAAGATTGCCTGGGCCTTGAACAAAGGAATAAAGGCGGATTATAAACAGT
ATTGGGATGTTGAACTTGGTGTCACTTACATTCCGTGGGACAAAGTCAAAGCTGAGGAGCTGGAGAGTTT
CTGTGAAGGAGGCATGCTGGACAGTGACACACTTAACCCAGATTGGAAAGGCATCCCCAAGAAGCCTGAC
AATGAAGTTGCCCAGAATGGAGGTGCAGAAACCTCCCACACAGAGCCAGTTTCCCCCATACCTAAGCCTG
TGCCTGTGCCGGTCCCTCCCATCCCTGTTCCTGCGCCTATAACAGTGCCACCTCCACAGGTCCCGCCCCA
TCAGCCGGGCCCTCCTGTTGTCGGTGCTCTCCAGCCGCCCGCTTTCACCCCTCCCTTAGGAATGCCCCCT
CCAGGCTTTGGCCCTGGCGTTCCTCCTCCCCCTCCTCCTCCACCATTTTTGCGCCCAGGATTCAACCCAA
TGCATTTACCACCAGGTTTCCTTCCTCCTGGACCCCCACCTCCTATAACTCCACCAGTATCCATTCCTCC
ACCTCACACTCCACCAATAAGCATCCCAAACTTGGTGTCTGGGGCTAGAGGAAATGCCGAGTCTGGTGAC
AGTGCGAAAATGTATGGTTCTGCTGGGCCACCTGCTGCACCCACGAGTCTGCCCACCCCTCCTGTAACCC
AGCCTGTGTCACTGCTTGGCACTCAAGGAGTTGCACCGGGTCCTGTAATTGGGCTCCAGGCACCCTCTAC
CGGTCTTCTTGGTGCCAGACCTGGCCTGATCCCACTCCAGCGCCCCCCAGGGATGCCTCCACCACATTTG
CAACGGTTCCCTATGATGCCACCTCGGCCCATGCCACCTCACATGATGCACAGGGGGCCACCACCAGGAC
CAGGGGGCTTTGCCATGCCCCCACCTCATGGAATGAAAGGGCCCTTCCCACCACATGGCCCCTTTGTTAG
GCCTGGTGGGATGCCAGGGCTGGGGGGCCCAGGGCCAGGCCCGGGAGCATCAGAAGACAGAGATGGAAGG
CAGCAACAACCACAGCAGCAGCCACCGCCACAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCAGCCAC
CACAGCAGTCACCATCACAGCAGCCAGCGCCAGCTCAGCAGCAGCCACCGCAGTTTAGAAATGATAGCAG
GCAGCAGTTCAACTCAGGTAGAGACCAAGAAAGGTTTGGAAGAAGATCTTTTGGAAGTAGGGTGGAAAAT
GACCGGGAACGGTATGGGAGCCGTAATGACGATAGAGATAATAGTAACCGTGAAAGGAGAGAGTGGGGAA
GAAGGAGCCCTGACCGGGACAGGCACAGAGACTTGGAAGAGAGAAGTAGACGCTCTAGTGGGCATCGGGA
CAGAGACAGGGATTCTAGAGATAGAGAGTCCCGTAGAGAGAAGGAAGAAAATCGAAAGGAGAAGCACGAG
GTGGCAGACAGGGCAGGTGGTAACAAAGCTGTGGAACCTCCCCTTAGCCAAGTGGGAACCATAGACACTG
TCTCAGAACTTAATAAGGGGGAGGCCATGGCCACGGTGGTAAAGCCTGAAGAGTCGCCTGCTGAGGTTAC
CTCACCCGTTGGACCCGAGAAGGATCCTGGCTCAGCAGCAGAGCCTCCTCGCTAG

Translation (1184 aa):
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIV
RQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSN
AAPVAENVTNNEGSPPPPVKISSELAQAPTNSMPTVAQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQP
PQPQSPALDSAVMAQVQAITAQLKTAPTQPPEQKTAFDKKLLDRFDYDDEPEAVEDSKKEDAAAISTAAL
ATAAPPAPTAATPAVATAVPVPSATSPPPPQTPFGYPGDGVQQPAYTQHQSMDQFQPRMMPIQQDTMHHQ
VPLPPNGQMPGFGLLSAPPPFPPMPQPGMPQPGMAQPGLAQPGMAQPTMPQPGMPQPGMPQPGMAQPGLA
QPGMAQPGMPQPAMPQPAMPQPGMAQPGVSPAPPVQPTFQSTFQPQNEPHSQKPHQQVEMEVEQPCVTEV
KRHVPESRKSRSRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQI
KSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNY
KVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKAEELESFCEGGMLDSDTLNPDWKGIPKKPD
NEVAQNGGAETSHTEPVSPIPKPVPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGMPP
PGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNLVSGARGNAESGD
SAKMYGSAGPPAAPTSLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHL
QRFPMMPPRPMPPHMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGASEDRDGR
QQQPQQQPPPQQQQQQQQPQQQPPQQSPSQQPAPAQQQPPQFRNDSRQQFNSGRDQERFGRRSFGSRVEN
DRERYGSRNDDRDNSNRERREWGRRSPDRDRHRDLEERSRRSSGHRDRDRDSRDRESRREKEENRKEKHE
VADRAGGNKAVEPPLSQVGTIDTVSELNKGEAMATVVKPEESPAEVTSPVGPEKDPGSAAEPPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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