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Report for CCDS90684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90684.1 Public Mus musculus 9 Trak1 23 108 98 CCDS HistoryNCBI Gene:67095Re-query CCDS DB by CCDS ID:90684.1Re-query CCDS DB by GeneID:67095See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90684.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000210636.1 ENSMUSP00000148092.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210636.1Link to Ensembl Protein Viewer:ENSMUSP00000148092.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210636Re-query CCDS DB by Protein ID:ENSMUSP00000148092
Original member Current member NCBI NM_001357973.1 NP_001344902.1 Accepted alive Link to Nucleotide Sequence:NM_001357973.1Link to Protein Sequence:NP_001344902.1Re-query CCDS DB by Nucleotide ID:NM_001357973Re-query CCDS DB by Protein ID:NP_001344902Link to BLAST:NP_001344902.1

Chromosomal Locations for CCDS 90684.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 121367104 121367191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121391857 121392051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121431479 121431555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121440670 121440786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121442692 121442792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121443626 121443818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGGCATTGGCAATTCAGCTCAGGCAGCCCTCCAGGGCCCAACCTCTGCCAGGACTCAGCCACACACTGG
CTGGGACAGACTCATGTGACGTGTGCAACAGCACCAACCTTCCAGAAGTTGAGATCATTAGCCTGCTGGA
GGAACAGCTGCCCCATTACAAGCTAAGAGCGGACACCATCTATGGTTACGACCACGATGACTGGCTGCAT
ACGCCCCTCATCTCCCCAGATGCCAACATCGACCTCACAACTGAGCAGATCGAAGAGACGCTGAAATACT
TCCTTCTATGTGCCGAAAGAGTTGGCCAGATGACTAAGACATACAATGACATTGATGCTGTCACGAGGCT
TCTTGAGGAGAAAGAGCGGGATTTGGAGCTGGCTGCGAGGATCGGTCAGTCATTGTTGAAGAAGAACAAG
ACCCTAACTGAGAGGAATGAACTGCTGGAAGAGCAGGTGGAGCACATCCGGGAGGAGGTGTCTCAGCTCC
GACATGAGCTGTCCATGAAAGACGAGCTGCTTCAATTCTACACCAGTGCCGCTGAGGAGAGCGAGCCTGA
GTCCGTCTGCTCAACCCCGCTGAAGAGGAACGAGTCCTCCTCCTCCGTCCAGAATTACTTCCACCTGGAC
TCTCTTCAGAAGAAGCTCAAGGACCTCGAAGAGGAGAACGTTGTACTTCGATCCGAGGTGACAAGTGTAC
CCCGCTCTCGCCCCTTGGGTGGGGGTGTCCCTCTGGCAGCGACAGCTTCAGTGACAGTGCCATCTGCTTA
G

Translation (256 aa):
MALAIQLRQPSRAQPLPGLSHTLAGTDSCDVCNSTNLPEVEIISLLEEQLPHYKLRADTIYGYDHDDWLH
TPLISPDANIDLTTEQIEETLKYFLLCAERVGQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLKKNK
TLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRNESSSSVQNYFHLD
SLQKKLKDLEEENVVLRSEVTSVPRSRPLGGGVPLAATASVTVPSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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