NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22452.1 Public Mus musculus 8 Clgn 23 108 98 CCDS HistoryNCBI Gene:12745Re-query CCDS DB by CCDS ID:22452.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002259.12 ENSMUSP00000002259.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002259.12Link to Ensembl Protein Viewer:ENSMUSP00000002259.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000002259Re-query CCDS DB by Protein ID:ENSMUSP00000002259
Original member Current member EBI ENSMUST00000109831.2 ENSMUSP00000105457.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109831.2Link to Ensembl Protein Viewer:ENSMUSP00000105457.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109831Re-query CCDS DB by Protein ID:ENSMUSP00000105457
Original member Current member NCBI NM_001329627.1 NP_001316556.1 Accepted alive Link to Nucleotide Sequence:NM_001329627.1Link to Protein Sequence:NP_001316556.1Re-query CCDS DB by Nucleotide ID:NM_001329627Re-query CCDS DB by Protein ID:NP_001316556Link to BLAST:NP_001316556.1
Original member Current member NCBI NM_009904.4 NP_034034.2 Accepted alive Link to Nucleotide Sequence:NM_009904.4Link to Protein Sequence:NP_034034.2Re-query CCDS DB by Nucleotide ID:NM_009904Re-query CCDS DB by Protein ID:NP_034034Link to BLAST:NP_034034.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316556.1 611 P52194 611 100% 0 0
NP_034034.2 611 P52194 611 100% 0 0

Chromosomal Locations for CCDS 22452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83395452 83395592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83397002 83397078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83397649 83397707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83399949 83400090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83408154 83408235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83409486 83409678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83410350 83410539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83420204 83420317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83420419 83420569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83423021 83423236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83424073 83424198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83424571 83424733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83425525 83425625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83426526 83426606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGCGTTTCCAGGGTGTTGGACTATGTTTGGGTCTCCTGTTCATCACGGTCAATGCGGACTTTATGGATG
ATGGTGTTGAGGTGGAAGACTTCAGTGAAAATTCAGACGAGAGTAATATTAAAGATGAACCTTCCTCGGG
GACTTTTAAGTATAAGACACCTCAACCTATAGGAGAAGTATATTTTACAGAAACATTTGATAGTGGAAAT
CTGGCTGGGTGGGTCTTATCAAAAGCAAAGAAGGATGATATGGATTCAGAAATTGCTATATATGATGGAA
GATGGGAAATAGAAGAACTGAAGGAAAACCAGGTGCCTGGCGACAGAGGGCTGGTTCTGAAGTCTAAAGC
CAAGCACCACGCAATAGCCGCTGTCCTCGAAAAACCCTTTATTTTTGCCGATAAACCTTTGATAGTTCAA
TATGAAGTAAATTTTCAAGATGGTATTGATTGTGGAGGTGCATACATTAAACTGCTAGCAGACACTGGTG
ATTTGATTCTGGAAAACTTTTATGATAAAACATCCTATACCATCATGTTTGGACCAGATAAATGTGGAGA
GGATTATAAACTTCATTTAATCTTCCGACACAAACATCCGAAAACTGGAGTTTTTGAAGAAAAGCATGCC
AAGCCTCCAGATGTCGATCTGAAGGAGTTCTTTACAGACAGGAAGACTCACCTCTATACCCTTGTGATGA
ATCCGGATGATACATTTGAAGTATTAATTGATCAGAAAGTTGTGAACCAAGGGACCTTGCTAGATGATGT
GGTCCCGCCTATCAACCCACCCAGAGAAATTGACGACCCCAGTGATAAAAAGCCAGAGGAGTGGGATGAC
AGAGCCAAGATCCCCGACCCTACCGCCGTCAGGCCAGAGGACTGGGATGAAAATGAACCTGCCCAAATAG
AAGACTCAAGTGCTGTTAAACCTGATGGCTGGCTTGATGATGAACCAAAGTTTATCCCCAATCCTAAAGC
TGAGAAACCTGAGGACTGGAGTGACGACATGGATGGAGAATGGGAGGCACCACATATTCCTAATCCAGCC
TGTCAGATTGGATGTGGAGAATGGAAACCTCCCATGATCGATAACCCAAAATACAAAGGAATCTGGAGAC
CACCAATGATCAATAATCCTAACTACCAGGGACTCTGGAGTCCTCAGAAGATTCCCAACCCAGATTACTT
TGAGGATGACCACCCCTTCCTCCTGACTTCTTTCAGTGCGCTGGGCTTAGAGCTTTGGTCCATGACTCCT
GACATCTACTTTGATAATTTTATCATCTGTTCAGAAAAGGAGGTGGCCGATCAGTGGGCTACAGATGGCT
GGGAACTGAAGATAATGGTGGCAAATGCTAATGAGCCTGGTGTACTCCGACAGCTGGTGATAGCCGCAGA
GGAGCGCCCCTGGCTCTGGCTCATGTACCTGGTGATGGCCGGCTTGCCCGTTGCATTAGTTGCTTCCTTT
TGTTGGCCAAGGAAAGTAAAGAAAAAATATGAAGACACGGGACCTAAAAAAACTGAATTATGCAAACTGC
AAAGCAAGGCCGCTCTGGAACAAGAGGCAGAGGAGGAGAAGGCCCCAGAGAAGCCAGAAGATGTGCAAGA
AGAAAAGAAGCCAGGTGAAGCTGAGGTCGTCACCGTGGAAAAGGAAGTAATTGGTGAACCGGAAGAGAAG
AGTAAGGAAGACAGAGAAACTCTAGAAGGTCAAGAGGAAGTGAGCAAGCTGAGTAAATCTGGATCAGAGG
ATGAGATGAAGGACGCTGATGAGAGCCCAGGATCTGGAGATGCCCCACTGAAGTCATTGCGGAAGAGGAG
GGTACGGAAGGATTGA

Translation (611 aa):
MRFQGVGLCLGLLFITVNADFMDDGVEVEDFSENSDESNIKDEPSSGTFKYKTPQPIGEVYFTETFDSGN
LAGWVLSKAKKDDMDSEIAIYDGRWEIEELKENQVPGDRGLVLKSKAKHHAIAAVLEKPFIFADKPLIVQ
YEVNFQDGIDCGGAYIKLLADTGDLILENFYDKTSYTIMFGPDKCGEDYKLHLIFRHKHPKTGVFEEKHA
KPPDVDLKEFFTDRKTHLYTLVMNPDDTFEVLIDQKVVNQGTLLDDVVPPINPPREIDDPSDKKPEEWDD
RAKIPDPTAVRPEDWDENEPAQIEDSSAVKPDGWLDDEPKFIPNPKAEKPEDWSDDMDGEWEAPHIPNPA
CQIGCGEWKPPMIDNPKYKGIWRPPMINNPNYQGLWSPQKIPNPDYFEDDHPFLLTSFSALGLELWSMTP
DIYFDNFIICSEKEVADQWATDGWELKIMVANANEPGVLRQLVIAAEERPWLWLMYLVMAGLPVALVASF
CWPRKVKKKYEDTGPKKTELCKLQSKAALEQEAEEEKAPEKPEDVQEEKKPGEAEVVTVEKEVIGEPEEK
SKEDRETLEGQEEVSKLSKSGSEDEMKDADESPGSGDAPLKSLRKRRVRKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH