NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88811.1 Public Mus musculus 15 Tnfrsf13c 23 108 98 CCDS HistoryNCBI Gene:72049Re-query CCDS DB by CCDS ID:88811.1Re-query CCDS DB by GeneID:72049See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88811.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000231049.1 ENSMUSP00000154899.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231049.1Link to Ensembl Protein Viewer:ENSMUSP00000154899.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231049Re-query CCDS DB by Protein ID:ENSMUSP00000154899
Original member Current member NCBI NM_001357758.1 NP_001344687.1 Accepted alive Link to Nucleotide Sequence:NM_001357758.1Link to Protein Sequence:NP_001344687.1Re-query CCDS DB by Nucleotide ID:NM_001357758Re-query CCDS DB by Protein ID:NP_001344687Link to BLAST:NP_001344687.1

Chromosomal Locations for CCDS 88811.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82223098 82223243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82223719 82223922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82224168 82224312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGGGCGCCAGGAGACTCCGGGTCCGAAGCCAGAGGAGCCGGGACAGCTCGGTGCCCACCCAGTGCAATC
AGACCGAGTGCTTCGACCCTCTGGTGAGAAACTGCGTGTCCTGTGAGCTCTTCCACACGCCGGACACTGG
ACATACAAGCAGCCTGGAGCCTGGGACAGCTCTGCAGCCTCAGGAGGGCTCCGCGCTGAGACCCGACGTG
GCGCTGCTCGTCGGTGCCCCCGCACTCCTGGGACTGATACTGGCGCTGACCCTGGTGGGTCTAGTGAGTC
TGGTGAGCTGGAGGTGGCGTCAACAGCTCAGGACGGCCTCCCCAGACACTTCAGAAGGAGTCCAGCAAGA
AACCCCTCATGCCTCAGCTCCTACCTGGCCTCCGCTCAAAGAAGATGCAGACAGCGCCCTGCCACGCCAC
AGCGTCCCGGTGCCCGCCACAGAACTGGGCTCCACCGAGCTGGTGACCACCAAGACAGCTGGCCCAGAGC
AATAG

Translation (164 aa):
MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTPDTGHTSSLEPGTALQPQEGSALRPDV
ALLVGAPALLGLILALTLVGLVSLVSWRWRQQLRTASPDTSEGVQQETPHASAPTWPPLKEDADSALPRH
SVPVPATELGSTELVTTKTAGPEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH