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Report for CCDS56666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56666.1 Public Mus musculus 1 Esrrg 23 108 98 CCDS HistoryNCBI Gene:26381Re-query CCDS DB by CCDS ID:56666.1Re-query CCDS DB by GeneID:26381See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56666.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110938.1 ENSMUSP00000106563.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110938.1Link to Ensembl Protein Viewer:ENSMUSP00000106563.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110938Re-query CCDS DB by Protein ID:ENSMUSP00000106563
Original member Current member EBI ENSMUST00000110939.7 ENSMUSP00000106564.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110939.7Link to Ensembl Protein Viewer:ENSMUSP00000106564.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110939Re-query CCDS DB by Protein ID:ENSMUSP00000106564
Original member Current member NCBI NM_001243792.1 NP_001230721.1 Accepted alive Link to Nucleotide Sequence:NM_001243792.1Link to Protein Sequence:NP_001230721.1Re-query CCDS DB by Nucleotide ID:NM_001243792Re-query CCDS DB by Protein ID:NP_001230721Link to BLAST:NP_001230721.1
Original member Current member NCBI NM_001357534.1 NP_001344463.1 Accepted alive Link to Nucleotide Sequence:NM_001357534.1Link to Protein Sequence:NP_001344463.1Re-query CCDS DB by Nucleotide ID:NM_001357534Re-query CCDS DB by Protein ID:NP_001344463Link to BLAST:NP_001344463.1
Original member Current member NCBI NM_001357535.1 NP_001344464.1 Accepted alive Link to Nucleotide Sequence:NM_001357535.1Link to Protein Sequence:NP_001344464.1Re-query CCDS DB by Nucleotide ID:NM_001357535Re-query CCDS DB by Protein ID:NP_001344464Link to BLAST:NP_001344464.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230721.1 435 P62509-2 435 100% 0 0
NP_001344463.1 435 P62509-2 435 100% 0 0
NP_001344464.1 435 P62509-2 435 100% 0 0

Chromosomal Locations for CCDS 56666.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 188043347 188043749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188066341 188066457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188146313 188146423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188150179 188150340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188198576 188198845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188210895 188211139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGTCAAACAAAGATCGACACATTGATTCCAGCTGTTCGTCCTTCATCAAGACGGAACCCTCCAGCCCAG
CCTCCCTGACGGACAGCGTCAACCACCACAGCCCTGGTGGGTCTTCCGACGCCAGTGGGAGTTACAGTTC
AACCATGAATGGCCATCAGAACGGACTGGACTCGCCACCTCTCTACCCCTCTGCTCCGATCCTGGGAGGC
AGCGGGCCTGTCCGGAAACTGTATGATGACTGCTCCAGCACCATCGTAGAGGATCCCCAGACCAAGTGTG
AATATATGCTCAACTCCATGCCCAAGAGACTGTGCTTAGTGTGTGGCGACATCGCCTCTGGGTACCACTA
TGGGGTTGCATCATGTGAAGCCTGCAAGGCATTCTTCAAGAGGACGATTCAAGGTAACATAGAGTACAGC
TGCCCAGCCACGAATGAATGTGAGATCACAAAGCGCAGACGCAAATCCTGCCAGGCCTGCCGCTTCATGA
AGTGTCTCAAAGTGGGCATGCTGAAAGAAGGGGTCCGTCTTGACAGAGTGCGTGGAGGTCGGCAGAAGTA
CAAGCGCAGAATAGATGCTGAGAACAGCCCATACCTGAACCCTCAGCTGGTGCAGCCAGCCAAAAAGCCA
TATAACAAGATTGTCTCGCATTTGTTGGTGGCTGAACCAGAGAAGATCTATGCCATGCCTGACCCTACTG
TCCCCGACAGTGACATCAAAGCCCTCACCACACTCTGTGACTTGGCTGACCGAGAGTTGGTGGTTATCAT
TGGATGGGCAAAACATATTCCAGGCTTCTCCACACTGTCCCTGGCAGACCAGATGAGCCTCCTCCAGAGT
GCATGGATGGAGATTCTGATCCTCGGCGTTGTGTACCGATCGCTTTCGTTTGAGGATGAACTTGTCTATG
CAGACGATTATATAATGGATGAAGACCAGTCTAAATTAGCAGGCCTTCTTGACCTAAATAATGCTATCCT
GCAGCTGGTGAAGAAGTACAAGAGCATGAAGCTAGAGAAGGAAGAATTCGTCACCCTCAAAGCAATAGCT
CTTGCTAATTCAGATTCCATGCATATAGAAGATGTGGAAGCTGTGCAGAAACTTCAGGATGTGTTACATG
AGGCCCTGCAGGATTACGAGGCTGGCCAGCACATGGAAGACCCTCGCCGTGCAGGCAAGATGCTGATGAC
GCTGCCGCTGCTGAGGCAGACCTCCACCAAGGCAGTCCAGCACTTCTACAACATCAAACTCGAAGGCAAA
GTGCCCATGCACAAACTTTTTTTGGAAATGCTGGAGGCCAAGGTCTGA

Translation (435 aa):
MSNKDRHIDSSCSSFIKTEPSSPASLTDSVNHHSPGGSSDASGSYSSTMNGHQNGLDSPPLYPSAPILGG
SGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYS
CPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKP
YNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQS
AWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIA
LANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGK
VPMHKLFLEMLEAKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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