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Report for CCDS21462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21462.1 Public Mus musculus 7 Clns1a 23 108 98 CCDS HistoryNCBI Gene:12729Re-query CCDS DB by CCDS ID:21462.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026506.4 ENSMUSP00000026506.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026506.4Link to Ensembl Protein Viewer:ENSMUSP00000026506.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026506Re-query CCDS DB by Protein ID:ENSMUSP00000026506
Original member Current member NCBI NM_023671.2 NP_076160.1 Accepted alive Link to Nucleotide Sequence:NM_023671.2Link to Protein Sequence:NP_076160.1Re-query CCDS DB by Nucleotide ID:NM_023671Re-query CCDS DB by Protein ID:NP_076160Link to BLAST:NP_076160.1

Chromosomal Locations for CCDS 21462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 97696730 97696869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97705589 97705725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97711700 97711798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97712627 97712734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97713907 97714080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97716451 97716518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGCTTTCCCCGGCAATGAGCTTCCTCAAAAGCTTCCCGCCGCCTGGGTCGGCCGACGGGCTCCGGCTGC
AGCAGCCAGACACCGAGGCTGTGCTGAACGGGAAGGGGCTCGGCACCGGCACGCTTTACATCGCGGAGAG
CCGCCTGTCCTGGTTAGATGGTTCGGGATTAGGATTCTCACTGGAATACCCCACCATTAGTTTACATGCG
GTGTCCAGGGATCCAAACGCTTACCCTCAAGAGCATTTGTATGTTATGGTGAATGCCAAGCTTGGAGAAG
AATCAAAAGAACCTCTCTCTGATGAAGATGAGGAAGACAATGATGATGTTGAACCCATTTCTGAATTTCG
ATTTGTGCCCAGTGATAAGTCAGCATTGGAGGCGATGTTCACAGCAATGTGTGAGTGCCAGGCCTTGCAT
CCAGACCCTGAGGATGAAGACTCGGACGACTATGATGGAGAGGAGTATGATGTGGAGGCACATGAACAAG
GACAAGGGGACATCCCTACATTTTATACCTATGAAGAAGGACTATCCCATTTAACAGCGGAAGGGCAAGC
CACGTTGGAGAGATTAGAAGGGATGCTTTCTCAGTCTGTGAGCAGCCAATATAATATGGCAGGCGTCCGA
ACAGAAGACTCAGTAAGAAATTATGAAGATGGCATGGAGGTGGAAACCACACCAACTGTTGCCGGACAGT
TTGAGGATGCAGATGTGGATCACTGA

Translation (241 aa):
MLSPAMSFLKSFPPPGSADGLRLQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPTISLHA
VSRDPNAYPQEHLYVMVNAKLGEESKEPLSDEDEEDNDDVEPISEFRFVPSDKSALEAMFTAMCECQALH
PDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAEGQATLERLEGMLSQSVSSQYNMAGVR
TEDSVRNYEDGMEVETTPTVAGQFEDADVDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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