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Report for CCDS29111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29111.1 Public Mus musculus 18 Polr2d 23 108 98 CCDS HistoryNCBI Gene:69241Re-query CCDS DB by CCDS ID:29111.1Re-query CCDS DB by GeneID:69241See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025106.4 ENSMUSP00000025106.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025106.4Link to Ensembl Protein Viewer:ENSMUSP00000025106.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025106Re-query CCDS DB by Protein ID:ENSMUSP00000025106
Original member Current member NCBI NM_027002.4 NP_081278.1 Accepted alive Link to Nucleotide Sequence:NM_027002.4Link to Protein Sequence:NP_081278.1Re-query CCDS DB by Nucleotide ID:NM_027002Re-query CCDS DB by Protein ID:NP_081278Link to BLAST:NP_081278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081278.1 142 Q9D7M8 142 100% 0 0

Chromosomal Locations for CCDS 29111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 31789172 31789244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31791840 31792020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31795288 31795383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31796050 31796128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGCGGCGGGTGGAAGCGATCCTCGGGCTGGCGACGTAGAAGAAGACGCTTCCCAGCTTATCTTTCCCA
AAGAGTTTGAGACAGCGGAGACTCTGCTGAACTCGGAAGTCCACATGCTTCTGGAGCATCGAAAGCAGCA
GAACGAGAGCGCGGAGGACGAGCAGGAGCTGTCGGAGGTCTTCATGAAAACCCTCAACTACACGGCCCGC
TTCAGCCGGTTCAAAAACAGAGAGACCATTGCCAGTGTGCGCAGCTTGCTTCTCCAGAAAAAGTTACATA
AGTTTGAGTTGGCCTGTTTAGCCAATCTTTGCCCGGAGACTGCTGAAGAGTCCAAAGCTCTGATTCCAAG
CCTGGAAGGGCGTTTTGAAGATGAGGAGCTGCAGCAGATTCTCGATGACATCCAGACGAAGCGCAGCTTC
CAGTACTGA

Translation (142 aa):
MAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTAR
FSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRSF
QY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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