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Report for CCDS28230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28230.1 Public Mus musculus 16 St3gal6 23 108 98 CCDS HistoryNCBI Gene:54613Re-query CCDS DB by CCDS ID:28230.1Re-query CCDS DB by GeneID:54613See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114357.9 ENSMUSP00000109997.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114357.9Link to Ensembl Protein Viewer:ENSMUSP00000109997.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114357Re-query CCDS DB by Protein ID:ENSMUSP00000109997
Original member Current member EBI ENSMUST00000114358.8 ENSMUSP00000109998.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114358.8Link to Ensembl Protein Viewer:ENSMUSP00000109998.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114358Re-query CCDS DB by Protein ID:ENSMUSP00000109998
Original member Current member EBI ENSMUST00000137035.7 ENSMUSP00000115756.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137035.7Link to Ensembl Protein Viewer:ENSMUSP00000115756.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137035Re-query CCDS DB by Protein ID:ENSMUSP00000115756
Original member NCBI NM_001357433.1 NP_001344362.1 Updated not alive Link to Nucleotide Sequence:NM_001357433.1Link to Protein Sequence:NP_001344362.1Re-query CCDS DB by Nucleotide ID:NM_001357433Re-query CCDS DB by Protein ID:NP_001344362
Current member NCBI NM_001357433.2 NP_001344362.1 Accepted alive Link to Nucleotide Sequence:NM_001357433.2Link to Protein Sequence:NP_001344362.1Re-query CCDS DB by Nucleotide ID:NM_001357433Re-query CCDS DB by Protein ID:NP_001344362Link to BLAST:NP_001344362.1
Original member NCBI NM_001357435.1 NP_001344364.1 Updated not alive Link to Nucleotide Sequence:NM_001357435.1Link to Protein Sequence:NP_001344364.1Re-query CCDS DB by Nucleotide ID:NM_001357435Re-query CCDS DB by Protein ID:NP_001344364
Current member NCBI NM_001357435.2 NP_001344364.1 Accepted alive Link to Nucleotide Sequence:NM_001357435.2Link to Protein Sequence:NP_001344364.1Re-query CCDS DB by Nucleotide ID:NM_001357435Re-query CCDS DB by Protein ID:NP_001344364Link to BLAST:NP_001344364.1
Original member Current member NCBI NM_018784.3 NP_061254.1 Accepted alive Link to Nucleotide Sequence:NM_018784.3Link to Protein Sequence:NP_061254.1Re-query CCDS DB by Nucleotide ID:NM_018784Re-query CCDS DB by Protein ID:NP_061254Link to BLAST:NP_061254.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344362.1 329 Q8VIB3 329 100% 0 0
NP_001344364.1 329 Q8VIB3 329 100% 0 0
NP_061254.1 329 Q8VIB3 329 100% 0 0

Chromosomal Locations for CCDS 28230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 58470647 58470727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58472311 58472463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58473409 58473546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58473654 58473840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58475850 58475945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58484763 58484826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58486395 58486498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58488904 58488981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58493680 58493768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGAAAGGGTATCTGGTGGCCATATTCCTGAGTTCCATCTTCCTCTATTATGTACTATACTGTATACTGT
GGGGAACAAATGGCTATTGGTTCCCAGCTGAAGAAATGAGGACTAGAAACAATGTCAATAATTGTTTTAA
AAAGCCAGCTTTCGCCAATCTTCTGAGATTTCCTCAGCTTTACCCATTTCTGTGCAGAGCTGACTTTATA
AAGGTTGCTGCCATGTCCGGTACCAATAATTTTCCGTTGCCCTATGGAATAAAGACCTTCGAGACATATT
TCAGCTCGGCCCTTTCAAAACTGCAGAGTTGTGATCTCTTTGACGAGTTTGACAGAGTGCCATGTAAAAG
GTGTGTGGTGGTTGGTAATGGAGGAGTGTTGAAGAATAAGACATTAGGAGCAACAATTGACTCCTATGAT
GTAATAATAAGAATGAACAACGGTCCTGTCTTAGGCCATGAAGAGGAAGTTGGGACAAGAACAACCTTCA
GGCTTTTTTATCCAGAGTCTGTCTTTTCAGACTCCAGTCACTATGACCCCAATACTACAGCGGTTCTCGT
CGTCTTTAAGCCACAGGATTTAAGGTGGCTGGTGGAAATACTGCTAGGTAAAAAAATAAATACTCAAGGG
TTTTGGAAGACACCAGCCTTAAAACTGATCTATAAACAATACCAAATCAGAATATTAGATCCATATATCA
CCAGCGAAGCAGCTTTTCAAATGCTTCGTTTTCCCAGAGTATTTCCCAAGGATCAGAAACCCAAACACCC
TACAACAGGAATTATTGCCATCACAATGGCCTTTCACATATGCAGTGAAGTGCACCTCGCTGGTTTTAAG
TACAACTTTTACAGCCCCAACAGTCCTTTACACTACTACGGGAATGCCACCATGTCTTTGATGAAGCAGA
ATGCATATCACAATCTGACTGCAGAGCAGCTCTTTTTAAACGACATTATAAAGAAAAAAATGGTGATCAA
CTTGACTTAA

Translation (329 aa):
MKGYLVAIFLSSIFLYYVLYCILWGTNGYWFPAEEMRTRNNVNNCFKKPAFANLLRFPQLYPFLCRADFI
KVAAMSGTNNFPLPYGIKTFETYFSSALSKLQSCDLFDEFDRVPCKRCVVVGNGGVLKNKTLGATIDSYD
VIIRMNNGPVLGHEEEVGTRTTFRLFYPESVFSDSSHYDPNTTAVLVVFKPQDLRWLVEILLGKKINTQG
FWKTPALKLIYKQYQIRILDPYITSEAAFQMLRFPRVFPKDQKPKHPTTGIIAITMAFHICSEVHLAGFK
YNFYSPNSPLHYYGNATMSLMKQNAYHNLTAEQLFLNDIIKKKMVINLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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