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Report for CCDS90490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90490.1 Public Mus musculus 9 Pdgfd 23 108 98 CCDS HistoryNCBI Gene:71785Re-query CCDS DB by CCDS ID:90490.1Re-query CCDS DB by GeneID:71785See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058692.8 ENSMUSP00000056240.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058692.8Link to Ensembl Protein Viewer:ENSMUSP00000056240.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000058692Re-query CCDS DB by Protein ID:ENSMUSP00000056240
Original member Current member NCBI NM_001357397.1 NP_001344326.1 Accepted alive Link to Nucleotide Sequence:NM_001357397.1Link to Protein Sequence:NP_001344326.1Re-query CCDS DB by Nucleotide ID:NM_001357397Re-query CCDS DB by Protein ID:NP_001344326Link to BLAST:NP_001344326.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344326.1 364 Q925I7-2 364 100% 0 0

Chromosomal Locations for CCDS 90490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 6168795 6168918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 6288490 6288676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 6293757 6293937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 6333324 6333386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 6337243 6337441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 6359703 6359917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 6376895 6377020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGCAACGGCTCGTTTTAGTCTCCATTCTCCTGTGCGCGAACTTTAGCTGCTATCCGGACACTTTTGCGA
CTCCGCAGAGAGCATCCATCAAAGCTTTGCGCAATGCCAACCTCAGGAGAGATGACTTGTACCAGAGAGA
GGAGAACATTCAGGTGACAAGCAATGGCCATGTGCAGAGTCCTCGCTTCCCGAACAGCTACCCAAGGAAC
CTGCTTCTGACATGGTGGCTCCGTTCCCAGGAGAAAACACGGATACAACTGTCCTTTGACCATCAATTCG
GACTAGAGGAAGCAGAAAATGACATTTGTAGGTATGACTTTGTGGAAGTTGAAGAAGTCTCAGAGAGCAG
CACTGTTGTCAGAGGAAGATGGTGTGGCCACAAGGAGATCCCTCCAAGGATAACGTCAAGAACAAACCAG
ATTAAAATCACATTTAAGTCTGATGACTACTTTGTGGCAAAACCTGGATTCAAGATTTATTATTCATTTG
TGGAAGATTTCCAACCGGAAGCAGCCTCAGAGACCAACTGGGAATCAGTCACAAGCTCTTTCTCTGGGGT
GTCCTATCACTCTCCATCAATAACGGACCCCACTCTCACTGCTGATGCCCTGGACAAAACTGTCGCAGAA
TTCGATACCGTGGAAGATCTACTTAAGCACTTCAATCCAGTGTCTTGGCAAGATGATCTGGAGAATTTGT
ATCTGGACACCCCTCATTATAGAGGCAGGTCATACCATGATCGGAAGTCCAAAGTGGACCTGGACAGGCT
CAATGATGATGTCAAGCGTTACAGTTGCACTCCCAGGAATCACTCTGTGAACCTCAGGGAGGAGCTGAAG
CTGACCAATGCAGTCTTCTTCCCACGATGCCTCCTCGTGCAGCGCTGTGGTGGCAACTGTGGTTGCGGAA
CTGTCAACTGGAAGTCCTGCACATGCAGCTCAGGGAAGACAGTGAAGAAGTATCATGAGGTATTGAAGTT
TGAGCCTGGACATTTCAAGAGAAGGGGCAAAGCTAAGAATATGGCTCTTGTTGATATCCAGCTGGATCAT
CATGAGCGATGTGACTGTATCTGCAGCTCAAGACCACCTCGATAA

Translation (364 aa):
MQRLVLVSILLCANFSCYPDTFATPQRASIKALRNANLRRDDLYQREENIQVTSNGHVQSPRFPNSYPRN
LLLTWWLRSQEKTRIQLSFDHQFGLEEAENDICRYDFVEVEEVSESSTVVRGRWCGHKEIPPRITSRTNQ
IKITFKSDDYFVAKPGFKIYYSFVEDFQPEAASETNWESVTSSFSGVSYHSPSITDPTLTADALDKTVAE
FDTVEDLLKHFNPVSWQDDLENLYLDTPHYRGRSYHDRKSKVDLDRLNDDVKRYSCTPRNHSVNLREELK
LTNAVFFPRCLLVQRCGGNCGCGTVNWKSCTCSSGKTVKKYHEVLKFEPGHFKRRGKAKNMALVDIQLDH
HERCDCICSSRPPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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