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Report for CCDS28464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28464.1 Public Mus musculus 17 Flywch2 23 108 98 CCDS HistoryNCBI Gene:76917Re-query CCDS DB by CCDS ID:28464.1Re-query CCDS DB by GeneID:76917See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28464.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024704.9 ENSMUSP00000024704.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024704.9Link to Ensembl Protein Viewer:ENSMUSP00000024704.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000024704Re-query CCDS DB by Protein ID:ENSMUSP00000024704
Original member Current member NCBI NM_001357140.1 NP_001344069.1 Accepted alive Link to Nucleotide Sequence:NM_001357140.1Link to Protein Sequence:NP_001344069.1Re-query CCDS DB by Nucleotide ID:NM_001357140Re-query CCDS DB by Protein ID:NP_001344069Link to BLAST:NP_001344069.1
Original member Current member NCBI NM_029798.4 NP_084074.1 Accepted alive Link to Nucleotide Sequence:NM_029798.4Link to Protein Sequence:NP_084074.1Re-query CCDS DB by Nucleotide ID:NM_029798Re-query CCDS DB by Protein ID:NP_084074Link to BLAST:NP_084074.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344069.1 139 Q9CQE9 139 100% 0 0
NP_084074.1 139 Q9CQE9 139 100% 0 0

Chromosomal Locations for CCDS 28464.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 23777002 23777099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23779628 23779949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGCCTCAGCCCAAACCCAGTGAGCAGGAGGGTGAGAGCATGAAGGCCAGCCAGGAACCAGCTCCCCAGC
CTGGCACAGATGTGGTCCCAGCAGCCCCCAGGAAGCCCAGAAAGTTCTCCAAACTGGTTCTGCTGACAGC
CTCCAAAGACAGCGCCAAAGTGGCTGGGGCCAAGCGCAAAGGAGTGCACTGCATCATGTCCCTGGGGGTG
CCAGGCCCAGCCACCTTGGCTAAGGCCCTCCTCAAGACTCATCCTGAGGCTCAGCGGGCCATTGAAGCGA
CTCCCCTGGAGCCCGAGCAGAAGCGCAGCAAGCAGAACCTGGATTCAGATGGTCCAGAAGACAATGGAGG
GTCAGGGGTGTCTTCTTCAAGTTCAGAGGAGACCACTGTGCTCCCTGAGGCCCCCAGCACTTCCCCATAA

Translation (139 aa):
MPQPKPSEQEGESMKASQEPAPQPGTDVVPAAPRKPRKFSKLVLLTASKDSAKVAGAKRKGVHCIMSLGV
PGPATLAKALLKTHPEAQRAIEATPLEPEQKRSKQNLDSDGPEDNGGSGVSSSSSEETTVLPEAPSTSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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