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Report for CCDS56667.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56667.1 Public Mus musculus 1 Angel2 23 108 98 CCDS HistoryNCBI Gene:52477Re-query CCDS DB by CCDS ID:56667.1Re-query CCDS DB by GeneID:52477See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56667.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027947.12 ENSMUSP00000027947.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027947.12Link to Ensembl Protein Viewer:ENSMUSP00000027947.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027947Re-query CCDS DB by Protein ID:ENSMUSP00000027947
Original member Current member EBI ENSMUST00000110899.6 ENSMUSP00000106524.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110899.6Link to Ensembl Protein Viewer:ENSMUSP00000106524.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110899Re-query CCDS DB by Protein ID:ENSMUSP00000106524
Original member Current member NCBI NM_001199020.1 NP_001185949.1 Accepted alive Link to Nucleotide Sequence:NM_001199020.1Link to Protein Sequence:NP_001185949.1Re-query CCDS DB by Nucleotide ID:NM_001199020Re-query CCDS DB by Protein ID:NP_001185949Link to BLAST:NP_001185949.1
Original member Current member NCBI NM_001357131.1 NP_001344060.1 Accepted alive Link to Nucleotide Sequence:NM_001357131.1Link to Protein Sequence:NP_001344060.1Re-query CCDS DB by Nucleotide ID:NM_001357131Re-query CCDS DB by Protein ID:NP_001344060Link to BLAST:NP_001344060.1
Original member Current member NCBI NM_001357133.1 NP_001344062.1 Accepted alive Link to Nucleotide Sequence:NM_001357133.1Link to Protein Sequence:NP_001344062.1Re-query CCDS DB by Nucleotide ID:NM_001357133Re-query CCDS DB by Protein ID:NP_001344062Link to BLAST:NP_001344062.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185949.1 522 Q8K1C0-2 522 100% 0 0
NP_001344060.1 522 Q8K1C0-2 522 100% 0 0
NP_001344062.1 522 Q8K1C0-2 522 100% 0 0

Chromosomal Locations for CCDS 56667.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 190932874 190933192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190937444 190937700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190939087 190939156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190940874 190941295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190942121 190942247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190942830 190942887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190943777 190943940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 190944940 190945091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGTTTCCCTATCCTCTAAAGAGTTTGGGTCGAGACTGGACCACGCCGTGGGAGGATCTACAGAAATATT
GCTGGCGCAGACACATTTCCAGTTGTCTGAGGTGGCCAGGACATTACTCCCGTGCGCCTTACCCATACTT
CAGTAGCAGGCATTTCTCATTGAACTGTAGACCACCTTTTCTGTTTGAGTCTGGAACGCAGTTTCAGTAC
TATAATTGGAGATCTGACCACCTTAGCAACGCATCCTTGATCCATCTCTCTCGTCACGTCATGACCTCTG
ACAGAGATGAGCCCTTATCTAAACGAAGAAAACATCAAGGAACAATAAAAAGGAACTGGGAGTATTTATG
TAGCCATAATAAAGAAAATACGAAGGACCTAGAAGACAGAAATGTTGACTCCACGTGTGAGGACCGTGAA
GATAAGTTTGACTTCTCAGTGATGTCTTATAACATCCTCTCGCAGGATTTACTGGAGGATAACTCTCACC
TCTACAGACATTGCCGACGTCCAGTGTTACACTGGAGTTTTCGGTTCCCCAATATCTTGAAAGAAATCAA
ACATTTTGATGCAGATGTGCTTTGTCTACAGGAAGTTCAAGAAGATCATTATGGGACAGAAATCAGGCCA
AGTCTGGAATCACTGGGTTATCATTGTGAATATAAAATGAAAACAGGAAGGAAGCCCGACGGCTGTGCCA
TCTGCTTCAAACATTCCAGGTTCTCGCTCTTATCTGTGAACCCAGTGGAGTTCTGCCGCCGCGACATTCC
TCTGCTGGACAGGGACAACATTGGATTGGTTTTACTCCTGCAGCCCAAGATCCCACGCGCTGCCTCTCCA
TCCATCTGCATAGCTAACACACATCTGCTCTATAATCCACGGCGCGGTGACATTAAGCTGACCCAGCTGG
CAATGCTGCTAGCTGAGATTGCCAATGTGACCCATCGCAAAGATGGCAGCTCCTGTCCTATTGTCATGTG
TGGTGACTTTAATTCTGTTCCTGGTTCTCCACTCTATAGTTTCATAAAGGAAGGAAAATTAAATTATGAA
GGTCTTGCAATTGGAAAGGTATCTGGCCAGGAACAGTCTTCACGGGGACAAAGAATTTTATCTATTCCAA
TTTGGCCCCCAAACCTAGGCATCTCTCAGAACTGTGTTTATGAGGCACAGCAGGTTCCCAAAGTAGAAAA
AACAGACAGTGATGTGACTCAAGCACAGCAGGAGAAAGCGGAGGTCCCAGTGTCAGCTGACAAAGTGTCC
TCGCATCTACAGCACGGTTTCAGCTTGTCATCTGTCTATTCCCATTATGTTCCTGACACTGGAGTTCCAG
AGGTGACCACCTGCCATTCCCGAAGTGCCATAACTGTTGATTATATTTTCTACACTGCAAAGAAGGAGAA
CACTGCTCAGGGGCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACTGTCACTT
CTAACAGAGCAAGACTTGTGGACTGTGAACGGCCTTCCCAATGAGCACAACTCCTCAGATCACCTGCCTT
TGCTGGCCAAGTTCAGGCTTGAGCTCTGA

Translation (522 aa):
MFPYPLKSLGRDWTTPWEDLQKYCWRRHISSCLRWPGHYSRAPYPYFSSRHFSLNCRPPFLFESGTQFQY
YNWRSDHLSNASLIHLSRHVMTSDRDEPLSKRRKHQGTIKRNWEYLCSHNKENTKDLEDRNVDSTCEDRE
DKFDFSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHYGTEIRP
SLESLGYHCEYKMKTGRKPDGCAICFKHSRFSLLSVNPVEFCRRDIPLLDRDNIGLVLLLQPKIPRAASP
SICIANTHLLYNPRRGDIKLTQLAMLLAEIANVTHRKDGSSCPIVMCGDFNSVPGSPLYSFIKEGKLNYE
GLAIGKVSGQEQSSRGQRILSIPIWPPNLGISQNCVYEAQQVPKVEKTDSDVTQAQQEKAEVPVSADKVS
SHLQHGFSLSSVYSHYVPDTGVPEVTTCHSRSAITVDYIFYTAKKENTAQGPGAEVALVGGLKLLARLSL
LTEQDLWTVNGLPNEHNSSDHLPLLAKFRLEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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