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Report for CCDS52742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52742.1 Public Mus musculus 9 Pigyl 23 108 98 CCDS HistoryNCBI Gene:66268Re-query CCDS DB by CCDS ID:52742.1Re-query CCDS DB by GeneID:66268See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52742.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000123680.1 ENSMUSP00000116929.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123680.1Link to Ensembl Protein Viewer:ENSMUSP00000116929.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123680Re-query CCDS DB by Protein ID:ENSMUSP00000116929
Original member Current member EBI ENSMUST00000148088.1 ENSMUSP00000116967.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148088.1Link to Ensembl Protein Viewer:ENSMUSP00000116967.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148088Re-query CCDS DB by Protein ID:ENSMUSP00000116967
Original member Current member NCBI NM_001082532.1 NP_001076001.1 Accepted alive Link to Nucleotide Sequence:NM_001082532.1Link to Protein Sequence:NP_001076001.1Re-query CCDS DB by Nucleotide ID:NM_001082532Re-query CCDS DB by Protein ID:NP_001076001Link to BLAST:NP_001076001.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076001.1 71 P0C1P0 71 100% 0 0

Chromosomal Locations for CCDS 52742.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 22157995 22158210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (216 nt):
ATGATCCGGTCCCTGCCCACCATGACCGTCCTCATCCCACTGGTCTCGCTGGCAGGCCTGCTCTACTCCG
CCTCCGTGGAGGAAGGCTTCCCAGAGGGCTGCACCAGCGCCAGCAGCCTGTGCTTCTACAGCTTGCTCTT
GCCGGTCACCGTGCCTGTGTACGTGTTCTTCCATCTGTGGACATGGATGGGCCTGAAGCTCTTCAGACAT
AACTAG

Translation (71 aa):
MIRSLPTMTVLIPLVSLAGLLYSASVEEGFPEGCTSASSLCFYSLLLPVTVPVYVFFHLWTWMGLKLFRH
N


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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