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Report for CCDS15602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15602.1 Public Mus musculus 1 Rrp15 23 108 98 CCDS HistoryNCBI Gene:67223Re-query CCDS DB by CCDS ID:15602.1Re-query CCDS DB by GeneID:67223See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001339.5 ENSMUSP00000001339.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001339.5Link to Ensembl Protein Viewer:ENSMUSP00000001339.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001339Re-query CCDS DB by Protein ID:ENSMUSP00000001339
Original member Current member NCBI NM_026041.2 NP_080317.3 Accepted alive Link to Nucleotide Sequence:NM_026041.2Link to Protein Sequence:NP_080317.3Re-query CCDS DB by Nucleotide ID:NM_026041Re-query CCDS DB by Protein ID:NP_080317Link to BLAST:NP_080317.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080317.3 281 Q9CYX7 281 100% 0 0

Chromosomal Locations for CCDS 15602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 186721403 186721546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186736116 186736314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186737588 186737685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186739604 186739863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186749164 186749308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGCTGCGGCCGTTCAGGACTCACGTGTGAGCCCAGGGGAGATACTGAAGCGTTCTCCGAAGAAGAAGA
AAAAGATGAAGATGGTAGCCAAGGCTGCAGCGTCGAAGCTAGAAGATGAGGTCAAAGACTCTTCTGATGG
AGAAGGAAGCTGTGACTCAGAGATGGACCACTCAGATGATGGAGCTGCAGAAGCAGACAGTGAGGACAAT
GTTGAATCCTGTGAGGAAGACAATGAAGACGCCGCAGAGTCGAGTGCTGGGACCAATTCAGGCTGGGCAG
ATGCCATGGCAAAAATCCTTAACAAAAAGACTCCTAAAAGCAAAGCCACCATCCTCACCAAAAACAAAGA
GCTGGAGAAGGAGAAGGAGAAGCTAAAGCAGGAGAGGCTGGAGAAAAGGAAGCAGCTTGATAAGAAGCGG
GAGTGGGAAATGCTGTGCAGAGTGAAGCCAGATGTTGTCAAAGACAAAGAGGCAGAGAGGAACCTTCAGA
GGATTGCGACAAGGGGTGTGGTGCAGCTCTTCAATGCTGTTCAGAAACACCAAAGGAATGTTGGCGAAAA
GGTTAAGGAAGCAGGAGGCTCCGTCCGCAAGCGAGCCAAGCTGATGTCAACTGTTTCCAAGAAGGATTTC
ATCAGTGTTCTTCGAGGAATGGATGGTACAAGTAGGAACAGTCCTGCTGGGAAGAGCCCCAAAGCCAGAC
AGACTGAAGTGAAATCAGAAGAGAGCCCAGGGTGGAAGATTCTGCGAGATGATTTCATGATGGGAGCCAG
CATGAAGGACTGGGACAAGGAGAGCGAGGGCGAGGAGCCTGCTGGTGGCAGGGCAGAGGCCGCAGCCAGC
CGTTGA

Translation (281 aa):
MAAAVQDSRVSPGEILKRSPKKKKKMKMVAKAAASKLEDEVKDSSDGEGSCDSEMDHSDDGAAEADSEDN
VESCEEDNEDAAESSAGTNSGWADAMAKILNKKTPKSKATILTKNKELEKEKEKLKQERLEKRKQLDKKR
EWEMLCRVKPDVVKDKEAERNLQRIATRGVVQLFNAVQKHQRNVGEKVKEAGGSVRKRAKLMSTVSKKDF
ISVLRGMDGTSRNSPAGKSPKARQTEVKSEESPGWKILRDDFMMGASMKDWDKESEGEEPAGGRAEAAAS
R


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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