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Report for CCDS35695.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35695.1 Public Mus musculus 1 Nckap5 23 108 98 CCDS HistoryNCBI Gene:210356Re-query CCDS DB by CCDS ID:35695.1Re-query CCDS DB by GeneID:210356See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35695.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112583.7 ENSMUSP00000108202.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112583.7Link to Ensembl Protein Viewer:ENSMUSP00000108202.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112583Re-query CCDS DB by Protein ID:ENSMUSP00000108202
Original member Current member NCBI NM_001081756.1 NP_001075225.1 Accepted alive Link to Nucleotide Sequence:NM_001081756.1Link to Protein Sequence:NP_001075225.1Re-query CCDS DB by Nucleotide ID:NM_001081756Re-query CCDS DB by Protein ID:NP_001075225Link to BLAST:NP_001075225.1

Chromosomal Locations for CCDS 35695.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 125914743 125915021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 125976926 125977062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 125981383 125981697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 126014571 126014649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 126023033 126023210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 126024276 126028015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 126033773 126033964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 126102544 126102663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 126110209 126110247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 126124043 126124111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 126222609 126222761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 126258391 126258478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 126382052 126382185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 126448454 126448517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 126528682 126528755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 126695686 126695754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5730 nt):
ATGGAGGGGAAGAGACAGCTGGATAGAAGGGACTTTGGTAAAAGACTCTCTCTGGACAGCAGTCTTGTGG
AATACATGGACTCTAACAAATGCATCGAGCACCTGCTGGCACAACTCAGGGAGCAACACAGAAGTCTCTG
GCGGGAGAAGCTGGCTGTGGCCAGGCTGCAGAGAGAAGTTGCCCAAAGGACAAGCCAAGGGGCCATGCAC
GAGAAGCTGATACATGAGTTGGAAGAGGAACGGCACTTGCGGCTACAGAGTGAGGAGCGGCTGCGGGAGG
TGACCCTGGAGTCAGAGCGCAACAGGATCCAGATGCTCGGCCTGCAGCAGCAGTTTTCCAGAATGGAAGA
AACTGTCCGAAGTCTGTTGCAGAGCCAAGGATCTCCAGAGCAGAAAAAGGAAGAACCTGCCAAGATCACA
GCCTACCAGGAAGGACTACCTGATGAAGAGAGAAAAGAGCAAGCAGCACTGGGTGATCTCCATGTGGTGG
CAGCTGATGAGGACTCAAGAAGCGAGCACAGTAGTGTGGAGGAGGGAAAGGAAGACAGCAGACTGCTCCT
GAAGAGACTGAAGGCCCTGGAGGCGGAGAATTCAGCACTGGCACTGGAAAACGAGAATCAGAGAGAACAG
TATGAGCGATGTCTTGATGAGGTAGCCAACCAAGTTGTTCGAGCTCTACTCACTCAAAAGGATCTGAGGG
AGGAGTGTGTAAAGTTGAAAACAAGAGTGTTTGACTTGGAGCAACAGAACCGAGCACTCAGCCTCCTGTT
CCAACAGCGAGTCAGACCAGCTTCTGATGTGCTTCTCCAGGAACACCTCCAGAATGCAAAATCAGGAACC
CCTGCCTTGAAACACTCTGGCTCAGGGGTTGTCATCCCTGATCACCTCTGTCCTCGCAACAGCTGCAGCA
GTGGCAGTGAGCTATCGCTGTCAAGCACCTGCAGCGAGTACTCCAGTGGCTCCTCCTACACGTGGCAAGA
CAGGAAGCTCATTGGGAAAAGGCAATCATCGCGGATCTGGGATAAAAGACTAAGTATTGATTCTTCGCTC
CCAAGTGGCTTCGCCAGCCCTGCAGATGAACTACCTCCGACCCGTATCAAAGAAAGCCACATTCTAGAGG
GACTGAGGAAGCTACAGAAGCGGAAAGTGTTCCTTGAATCACCATCATTGGTGATAAGCAAATGGGGTTA
TAAAGATTGCATGAACTCGAATGAAGGGATCTATTCGCCAGGAATTAAAACCAGCAGCCTCAAGGAGTGT
CCGCCCTGCCAACCGTCTGGCATGGGGATCCCCTGCCAGAATCTCCATCAGACATTCATCTATGATGCAA
ATTCTCATGAGGATGCACATGAAGAACTCCCATCCTCAGCCTTGCCACTAACATCTCCGAGCCAGGGCTA
CAGAATACAGGGCAGTAAATTGACACACAGTGTTTCAGACAGTCTGTTTAACTGGGAGCCACATAGGAAG
TACTTTGCAGAAGGTACAGCCTCAGTATATACCAGAGAAATGCCTGAAAGGCTAGCTCGTTGTGCTAGCC
ACTGCCCCTTGGAGAGGAAGCTATGTCCCAGTATACACCTGCCCTGGGTGCAAAGAGACAGGGACCCACA
CAGCCAAGTTCATGGCCATGTGCCTCTGAACCTGCAGCTCTCAGATACCGATGACAATGAGACCCTAAAC
GAGCTACACATAGAGAGCAGTGATGAGAGAAGCCCTTCAGACCTGTCCTTGACTGGGGACACCGACAAGT
CCATGGAGAACCTAGAGGTGGGATTCAGAAAGTCTGAAGGTGGCTCTCGGGACATGGGAGAAGAAGCATG
TCCCACCCACTTAGAGACTAGCCCGAAGGCATTCAGTTTCATCAAGCAACAAAGGGTTGTCAAGAGGACC
TCTTCGGAAGAATGTGTCACGGTCATATTTGATGCAGAAAATGGAGAGCCAGTGGAATTCAGCTCTCACC
AGGCTGGAGTCGTCACTGTCACCAGGGATGAAATTTCCATCAGCTCAGCCCTTGCTGGGCCCTCAGAGGA
ACTCACTGAACTTTCACCTCAGGAAATTACTCACTTCCAGGCAGGAGCTACTGCAAGAGACTGTCCTTTT
CTGAAGAGACCTGAAGAGGAGACTGCGAAAAACATTCCAAAAGATGAAAATCATATTCTCACAGCTCCGA
ATGACTTCTTCAGCTCCCAGACTATAATAACTCAGAATTCCCCAAGACCAAAGCTCGCCAAACCCACACA
GGGGGTAGCCTGGCAGAGTAATTCTAGACCTGTTGGAAACATGGGTGTCTACACAAAGCAAGGTCTGACA
AAAATCCCTTCCAGAGGCAAGTCTTCACCTCAGAAATCCAAACTTGTGGAGTCTATGCCCACCATGCTGG
TCCCCTCCAGTGCCCTAGTGACTCCTGAAAAGACACCAGCATCCCCTATGGGGAAACTCTCACAATGTAG
AAAGGCAGAGAGCCCTGGTTCTCTCTGTGATGTACAGCCAGAATCACACATTCCAAAACACCCTGCCCAG
GTTCCTCATATCCCCAAAATTTCCAATAAGAAGAACTGGGTTCAGTGCCCCAGGAGTCAGACTTCAGGGA
TCCAGTCACGGCATCTCATGGGGAGAAGTGACAGTAGTGAAATGAGGTCCAATGGCTGTGTCTCTGCGCC
ACAGACAAGAATGAGGTCTCCCTCCCCTCCAACCCCTCCAGGGAGATCAGTGTCACTCCTGGTTAGACCC
AGTTATGATTACCCACCACTACCATCACCTGCCAAACCTGAAACTCAGGGCCCTGGAGACGCTGTAAGTC
CAGGGTTGAAATCCCCGCTGTTGAAAGGATCCTCTGCTCCTCTTGTCTCTTCCAGTCCAGTGATGTCAGA
AATACAGAAGAAACCATCTGTGGCCTCCAGAAAGTCTGCCTTCCCTCCAGCTCTTCCCTCAACCCAAGCG
GTAGTGCACACCAGATACCCTGAACACATAGCCTCCAGTCCATTTGCTGTGACGACTTCAGGGCCCCCAA
AAGTCTCTCCAAAAAGAGGCATCCCTAAACCTCCCCCTCACCATGCACTAGGAACTGCCCACATGGACAC
AGACTTACAGACACCCAAGACTTGTCCTTCAAGCTGTGAACTGCTAGAGGTGACATCTTGTAAAAGCCTG
TCTCCAGGGAGAAAAAGACAGTTGAGTGACAGCACTGTGATGCCCCACAGGCCTTCCTTCTCAGGAGTGA
ATGAGTCCTTGACACCTCAGGTTAACAGTCCATCCTCCTCTTCCTCATCCTGTAGAAACCAAGGGTCCTC
ACAAGGTGGCCAGAACTCTCCCGAGAAAGGACCTAAAACTCGCCTCCCAGTAGGACTCAAAGTTCTCATG
AAGTCTCCTCAGTTGCTCAAGAAAACTTCCTTGGTACCAGGGAAACAAGAAAAGGATAGTTTAAATGAAG
CATCTCGAAGCTGTGTAGCAGCAAACACGTCTAATCCTGAGGACTCCAAAGACCCTGCAAGTCTGGAGAC
CTCAAGAGATGAGAGAACCACAGCCTTACTAGGTGTGAGAGGTCCCGACAGTCTAGCTAGAGGACTTGCC
TTAGACTCAACAATGCCAGAATCGTTAGAATGTAGCATCTCCAGAGATGATGGAAGAGATGGGGCAGACA
GCAGAGCCATAAAAAGATCCTTCTCCTCCAGCAAGCCACACCTAAAGCCTGCTCTAGGCATGAATGGAGC
CAAAGCTCGGAGTCAGAGCTTCAGCATCCACTTGGGAGAGAAGCCTTCCACACCCCCAACAGAAGGGCCA
GGCAAGATTCGAACTCAGATTATCACCAACACGGCTGAAAGAGGCAACTCCCTCACCAGACAGAATATCT
CAATGGAAGGGTCCCCAAGCAAGACCCCCTCTGTCTCAACATCTGATAATCTGCCCAATGCTGGAAGGCC
CCTGGGAAACCCCTTTTCCAGGCAGAGTTCTCTCTGTAGCACCGGAAGTTCTAGCAGCCAGCACGGAAGC
CCAAGCAAGTTACCCTTGAGGATGCTCACAAGGCCGGAAGGACTCCTCACTCCTGGAGTGGAAGACCAAC
GGCTCTCTACTCAGGAAGAGTGTCCTGAAAGAGGTGTACATGAGCAATCTAGCAGTGACCACCATAGGCA
TCCATCTCCTCTTTCAGACTGCCCTCAGTTCCTGCACGTTCCAGGGAGGATGCAGCGCCCAAGCAATTTG
GAAACAAGTGGGATATCTAAGCTAGAAACTTCTGGAAGGCATCCAGATGCTTCTTCAACTGGGACTAGTG
TCGTGAGCCCAGAAGCCCCCCTCTCACCCTCCATCGAAGAAAAGGTCATGTTGTGCATTCAGGAGAATGT
GGAAAAGGGCCAAGTGCAGACAAAGTCTGCCTCTGTGGAAGTGAAGCCCAGGGCAGGGCCTTCGTTCACC
AGCTGGTTTGGTTTTCGAAAGAGCAGGCTTCCAGCTCTCAGTAGCAGGAGAATGGAAGCTTCCAAGAGTA
AAGTGGAAAAGAAAGACACAAAACTGAAATCTGAGAGGAAAAAAGAAAAGAAGAAAGCTGAAGTACAATC
AAAGATAGAAAACGAACTGAGTAGGGGGACCAAGAAGGCAGATGGTCAGAGTCCAGACGATGGTCTGCAA
AGCTCAGAGAGTCTGAAAGTATCCCAAGACATTTATAACCAAATGAAGTTGGAGCCAAGGAATAGACCCA
GCCCTGCTGTGTGCCCAACAAAAGATGCCTTCATGACAGAACTTCTAAACAGAGTTGATAAGAGAGCCTC
GGTACAGAGAGAGAGTGGATCAAAGGGTGTTTCCTGCAGGAGCGTGTTAGAGGGCACCTCCCAGGGCTCC
TGTTTCGCCAGCGGCTCTGTGAGCACTCAAGGAAGTCAAAAGAAAAACATCAAAACCAAAGTCGATATGG
AAAAACCAAGAGAATCCTTGGGGGCCGAGGTCAATGAAGATGTACAAGAAGATGAAGAAGATAGAGTTGC
TGACACTACTCTCCAGAGCCACATGATAGAATCCAACTGCCAGATGAGAACACTGGACAGCGGGATTGGA
ACCTTTCCCCTCCCAGACTCAGGAAACCGCTCAGTGGGACGATACATATGCCAGCAGGACTCTCCAGAGG
ACACTGATGCCCTCCTGCCTCTCCAGCCAGCCGCTTCCATGGCATCCTCTGCCAGAGCCCAAACCCTTGA
CCGCGAAGTGCCTTCCTCCACAGACAGCCAGAGCTCCCCGGAGTCCATGATCATCCATTCCATATCTGAC
CCCAGCATGATGGCCAGAGAGATGAGAGCCTCACAGAGTCACCTTCCCAAGCCTACCTCCTCAGGAAAAC
CTAGTTTTGAAAAGCAAAATGGAGCAGAGTCAAAGGCTCACACTGGCCCATCATTCGAATATGCTGAGGA
TGCAGTGGCAAGTGAGCCCCTTTCAGGATGGAGGGGTGAAGATGCTACTACTGAGACCCAGGAACCGAAA
CAAGTTGAAGAAACAAAAGAAGATCCTGAGAATAGATTATCTGAAATTTCCCTGGAGTCATTCAATAAAT
TTAGCAGCAATACTGTGATTTTATTAGGAAAAGAGAAGTCTCCAAGTGAGGTTGAAGGACAAAAGGAAGA
GAAAGGCAAAAAGACAGAAGTGTCTTCGAGTAGCTCCGAACGGCCTGGGGTGGACCGCGTGGAGTCTCTG
AGTGACTCTCTGTATGACAGTTTCTCCTCTTGTGCAAGTCAAGCATCCAACGAGGCCTAG

Translation (1909 aa):
MEGKRQLDRRDFGKRLSLDSSLVEYMDSNKCIEHLLAQLREQHRSLWREKLAVARLQREVAQRTSQGAMH
EKLIHELEEERHLRLQSEERLREVTLESERNRIQMLGLQQQFSRMEETVRSLLQSQGSPEQKKEEPAKIT
AYQEGLPDEERKEQAALGDLHVVAADEDSRSEHSSVEEGKEDSRLLLKRLKALEAENSALALENENQREQ
YERCLDEVANQVVRALLTQKDLREECVKLKTRVFDLEQQNRALSLLFQQRVRPASDVLLQEHLQNAKSGT
PALKHSGSGVVIPDHLCPRNSCSSGSELSLSSTCSEYSSGSSYTWQDRKLIGKRQSSRIWDKRLSIDSSL
PSGFASPADELPPTRIKESHILEGLRKLQKRKVFLESPSLVISKWGYKDCMNSNEGIYSPGIKTSSLKEC
PPCQPSGMGIPCQNLHQTFIYDANSHEDAHEELPSSALPLTSPSQGYRIQGSKLTHSVSDSLFNWEPHRK
YFAEGTASVYTREMPERLARCASHCPLERKLCPSIHLPWVQRDRDPHSQVHGHVPLNLQLSDTDDNETLN
ELHIESSDERSPSDLSLTGDTDKSMENLEVGFRKSEGGSRDMGEEACPTHLETSPKAFSFIKQQRVVKRT
SSEECVTVIFDAENGEPVEFSSHQAGVVTVTRDEISISSALAGPSEELTELSPQEITHFQAGATARDCPF
LKRPEEETAKNIPKDENHILTAPNDFFSSQTIITQNSPRPKLAKPTQGVAWQSNSRPVGNMGVYTKQGLT
KIPSRGKSSPQKSKLVESMPTMLVPSSALVTPEKTPASPMGKLSQCRKAESPGSLCDVQPESHIPKHPAQ
VPHIPKISNKKNWVQCPRSQTSGIQSRHLMGRSDSSEMRSNGCVSAPQTRMRSPSPPTPPGRSVSLLVRP
SYDYPPLPSPAKPETQGPGDAVSPGLKSPLLKGSSAPLVSSSPVMSEIQKKPSVASRKSAFPPALPSTQA
VVHTRYPEHIASSPFAVTTSGPPKVSPKRGIPKPPPHHALGTAHMDTDLQTPKTCPSSCELLEVTSCKSL
SPGRKRQLSDSTVMPHRPSFSGVNESLTPQVNSPSSSSSSCRNQGSSQGGQNSPEKGPKTRLPVGLKVLM
KSPQLLKKTSLVPGKQEKDSLNEASRSCVAANTSNPEDSKDPASLETSRDERTTALLGVRGPDSLARGLA
LDSTMPESLECSISRDDGRDGADSRAIKRSFSSSKPHLKPALGMNGAKARSQSFSIHLGEKPSTPPTEGP
GKIRTQIITNTAERGNSLTRQNISMEGSPSKTPSVSTSDNLPNAGRPLGNPFSRQSSLCSTGSSSSQHGS
PSKLPLRMLTRPEGLLTPGVEDQRLSTQEECPERGVHEQSSSDHHRHPSPLSDCPQFLHVPGRMQRPSNL
ETSGISKLETSGRHPDASSTGTSVVSPEAPLSPSIEEKVMLCIQENVEKGQVQTKSASVEVKPRAGPSFT
SWFGFRKSRLPALSSRRMEASKSKVEKKDTKLKSERKKEKKKAEVQSKIENELSRGTKKADGQSPDDGLQ
SSESLKVSQDIYNQMKLEPRNRPSPAVCPTKDAFMTELLNRVDKRASVQRESGSKGVSCRSVLEGTSQGS
CFASGSVSTQGSQKKNIKTKVDMEKPRESLGAEVNEDVQEDEEDRVADTTLQSHMIESNCQMRTLDSGIG
TFPLPDSGNRSVGRYICQQDSPEDTDALLPLQPAASMASSARAQTLDREVPSSTDSQSSPESMIIHSISD
PSMMAREMRASQSHLPKPTSSGKPSFEKQNGAESKAHTGPSFEYAEDAVASEPLSGWRGEDATTETQEPK
QVEETKEDPENRLSEISLESFNKFSSNTVILLGKEKSPSEVEGQKEEKGKKTEVSSSSSERPGVDRVESL
SDSLYDSFSSCASQASNEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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