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Report for CCDS49584.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49584.1 Public Mus musculus 15 Cdh9 23 108 98 CCDS HistoryNCBI Gene:12565Re-query CCDS DB by CCDS ID:49584.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49584.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026432.7 ENSMUSP00000026432.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026432.7Link to Ensembl Protein Viewer:ENSMUSP00000026432.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026432Re-query CCDS DB by Protein ID:ENSMUSP00000026432
Original member Current member EBI ENSMUST00000228307.1 ENSMUSP00000154022.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228307.1Link to Ensembl Protein Viewer:ENSMUSP00000154022.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228307Re-query CCDS DB by Protein ID:ENSMUSP00000154022
Original member Current member NCBI NM_009869.2 NP_033999.1 Accepted alive Link to Nucleotide Sequence:NM_009869.2Link to Protein Sequence:NP_033999.1Re-query CCDS DB by Nucleotide ID:NM_009869Re-query CCDS DB by Protein ID:NP_033999Link to BLAST:NP_033999.1

Chromosomal Locations for CCDS 49584.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 16778101 16778325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 16823159 16823453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 16828344 16828463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 16828942 16829109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 16830887 16831074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 16832025 16832278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 16848486 16848622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 16849081 16849202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 16850292 16850409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 16850774 16851025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 16855755 16856242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2367 nt):
ATGAGGACTTACAGTTGTCTTCAACTGGTCATCTGGACTTGCATTTTCCATATGGTTGACAACAGCACAT
TACAAGGAAAGGATAGCAGTCACTTCCTGAGAAGGATAGTGAATCTGAAAAAGGATGAGGGTAAAATGCT
CCATCGTGCCAAGCGTGGCTGGATGTGGAATCAGTTCTTCCTCTTAGAAGAGTATACAGGTACAGACACT
CAGTATGTAGGAAAGCTTCACACTGACCAAGATAAAGGAGATGGAAATTTAAAATACATTTTGACAGGAG
ATGGAGCTGGCAATCTGTTTGTTATAGATGAAAATACAGGAGATATTCACGCTGCAAAGAGACTAGACAG
AGAAGAAAAATCTCTGTACATTCTTCGTGCCAAGGCTATAGACAGAAAGACCGGACGACAAGTGGAGCCA
GAATCTGAGTTTATCATTAAAATCCATGATATTAATGACAATGAACCAAAATTCACGAAAGACCTGTACA
CAGCCAGTGTTCCTGAAATGTCTGGAGTTGGTACGTCTGTTATACAAGTAACTGCCACCGATGCAGATGA
TGCTAACTATGGGAACAGTGCTAAAGTGGTCTACAGCATTCTGCAAGGGCAGCCATACTTTTCAGTGGAC
CCGGAATCAGGCATAATAAAGACTGCATTGCCAGACATGAGCAGAGAAAACAAAGAGCAGTACCAAGTTG
TTATTCAGGCTAAGGACATGGGTGGCCAGATGGGAGGCCTCTCTGGCACCACCACAGTGAACATCACCCT
AACAGATGTCAACAACAACCCTCCTCGGTTCCCACAGAGCACTTATCAGTTTAATTCTCTGGAGTCGGCA
CCTCTTGGAACTCATCTTGGAAGGATAAAAGCCAATGACCCAGACATGGGGGAGAACGCCGAGCTGGAAT
ATAGCATTGCAGAAGGAGAAGGATCAGACATGTTTGATGTGATCACTGACAAAGATACACAGGAAGGGAT
CATAACTGTCAAACAGAATTTAGATTTTGAAAAGAAAATGTTGTACACTTTAAGAGTGGATGCAAGTAAT
ACCCACCCTGATCCTCGATTCTTACACCTTGGACCTTTCAAAGACTCAGCCATGGTTAAGATATCTGTGG
AAGATGTAGATGAGCCCCCTGTGTTCAGTAAGCTCTCTTACTTGATGGAAGTTGATGAAGATGTGAAGGA
GGGGAGCATCATCGGACAAGTCACAGCATATGACCCAGATGCCATGAACAACATAATAAAATACTCTGTG
GACCGCCATACTGATATGGACCGAGTTTTCAGTATTCACTCAGAAAATGGTTCTATCTTCACTCTGAAAC
CCCTGGATCGGGAATCATCCCCTTGGCATAACATCACCATTACAGCCACAGAGATAAATAACCCAAAACA
AAGTAGCCAAATTCCTGTCTTCATCAGAATCCTTGATATAAATGATCATGCTCCAGAATTTGCCACTTAC
TATGAAACATTTGTTTGTGAAAATGCAAAGTCTGGCCAGTTGATTCAAACTATAAGTGTCATGGACAAAG
ATGATCCTCCTCGAGGACACAAGTTCTTCTTTGAGCCAGTGCCAGAATTTCCTCTAAACCCAAACTTCAC
AATTGTAGACAATAAAGATAATACAGCAGGAATTGTAACTCGAAAAGATGGGTACAGCCGCAACAAAATG
AACACCTACCTACTGCCGGTTTTAATCTTCGACAATGATTATCCTATTCAAAGCAGCACTGGCACACTCA
CGATCCGTGTGTGCGCATGCGATAACCTGGGGAACATGCAGTCCTGCAATGCGGAGGCCCTGATGCTTGC
TGCAGGCCTGAGCACAGGGGCGCTCATCGCTATTCTCCTTTGTGTCGTCATCCTGCTTACTCTAATTGTA
CTGTTTGCTGCATTGAAGAGGCAACGGAAAAAGGAGCCTCTGATCATTTCAAAGGATGACGTCCGGGACA
ATATTGTGACCTATAATGACGAAGGTGGTGGAGAGGAAGACACACAGGCTTTTGACATCGGCACATTAAG
GAATCCGGAAGCAAGAGAAGACAGTAAACTTAGAAGAGATGTCATGCCTGAAACTATTTTTCAGATAAGG
AGGACAGTACCCCTCTGGGAAAATATTGACGTACAAGATTTTATACACCGGAGACTGAAAGAAAACGACT
CAGACCCAAGTGCACCGCCCTACGACTCCCTGGCCACTTATGCCTATGAAGGGAATGATTCTGTTGCCAA
TTCTCTCAGCTCCTTAGAATCTCTCACAGCTGATTGCAACCAGGATTATGATTACCTTAGCGACTGGGGA
CCTCGGTTCAAAAAACTCGCAGAAATGTATGGGGGTAACGACAGTGATCTGAACTGA

Translation (788 aa):
MRTYSCLQLVIWTCIFHMVDNSTLQGKDSSHFLRRIVNLKKDEGKMLHRAKRGWMWNQFFLLEEYTGTDT
QYVGKLHTDQDKGDGNLKYILTGDGAGNLFVIDENTGDIHAAKRLDREEKSLYILRAKAIDRKTGRQVEP
ESEFIIKIHDINDNEPKFTKDLYTASVPEMSGVGTSVIQVTATDADDANYGNSAKVVYSILQGQPYFSVD
PESGIIKTALPDMSRENKEQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNNNPPRFPQSTYQFNSLESA
PLGTHLGRIKANDPDMGENAELEYSIAEGEGSDMFDVITDKDTQEGIITVKQNLDFEKKMLYTLRVDASN
THPDPRFLHLGPFKDSAMVKISVEDVDEPPVFSKLSYLMEVDEDVKEGSIIGQVTAYDPDAMNNIIKYSV
DRHTDMDRVFSIHSENGSIFTLKPLDRESSPWHNITITATEINNPKQSSQIPVFIRILDINDHAPEFATY
YETFVCENAKSGQLIQTISVMDKDDPPRGHKFFFEPVPEFPLNPNFTIVDNKDNTAGIVTRKDGYSRNKM
NTYLLPVLIFDNDYPIQSSTGTLTIRVCACDNLGNMQSCNAEALMLAAGLSTGALIAILLCVVILLTLIV
LFAALKRQRKKEPLIISKDDVRDNIVTYNDEGGGEEDTQAFDIGTLRNPEAREDSKLRRDVMPETIFQIR
RTVPLWENIDVQDFIHRRLKENDSDPSAPPYDSLATYAYEGNDSVANSLSSLESLTADCNQDYDYLSDWG
PRFKKLAEMYGGNDSDLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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