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Report for CCDS41105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41105.1 Public Mus musculus X Hdx 23 108 98 CCDS HistoryNCBI Gene:245596Re-query CCDS DB by CCDS ID:41105.1Re-query CCDS DB by GeneID:245596See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113422.8 ENSMUSP00000109049.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113422.8Link to Ensembl Protein Viewer:ENSMUSP00000109049.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113422Re-query CCDS DB by Protein ID:ENSMUSP00000109049
Original member Current member NCBI NM_001080549.2 NP_001074018.1 Accepted alive Link to Nucleotide Sequence:NM_001080549.2Link to Protein Sequence:NP_001074018.1Re-query CCDS DB by Nucleotide ID:NM_001080549Re-query CCDS DB by Protein ID:NP_001074018Link to BLAST:NP_001074018.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074018.1 692 Q14B70-1 692 100% 0 0

Chromosomal Locations for CCDS 41105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 111577273 111577398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111582795 111582917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111589195 111589278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111592961 111593040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111600618 111600825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111622301 111622447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111649837 111649890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111659634 111660743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111671343 111671489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2079 nt):
ATGAATCTACGTTCTGTATTTACTGTAGAGCAACAAAGGATTTTACAGCGTTATTATGAAAATGGAATGA
CAAATCAAAGTAAAAATTGCTTTCAGCTCATATTACAGTGTGCACAGGAGACTAAGCTGGACTTCAGTGT
AGTCAGGACGTGGGTTGGCAATAAGCGAAGAAAAATGAGTAGTAAAAGCTGTGAATCAGGAGCAGCAGGA
ACTGTGTCTGGTACCTCATTGGCAGCGCCAGACATTACAGTCAGAAATGTGGTTAATATTGCCCGCCCTT
CAAGCCAGCAATCTTCTTGGACTTCTGCCAATAATGATGTCATTGTAACTGGTATATACAGTCCAGTAAG
CTCATCAAGTAAGCAAGGCACTACAAAGCATACAAATACACAAATTACAGAAGCACATAAAATTCCTATT
CAGAAGGCAGCCAATAAAAATGACACTGAATTACAATTGCACATTCCTGTTCAAAGACAAGTAGCGCACT
GTAAGAATGCTTCTGTGCTCCTAGGGGAAAAGACAATTATTTTGTCAAGACAGACAAGTGTACTAAATGC
TGGAAACTCAGTGTACAATCACACAAAGAAAAGCTATGGAAGTTCTCCGGTGCAAGCTTCAGAAATGACA
GTACCTCAAAAGCCATCTGTGTGCCAGCGACCTTGCAAAATTGAACCAGTTGGGATTCAAAGGTCATATA
AACCTGAACATGCAGGTCTGGCATCACATAACTTATGTGGGCAAAAGCCAACCATTAGAGACCCTTGCTG
TAGAACACAAAACTTGGAAATTCGTGAAGTGTTTTCATTGGCAGTCAGTGATTACCCTCAGAGAATTCTG
GGAGGAAATAGCACACAGAAGCCGGCCTCAGCAGAAGGAACTTGTTTGTCCATTGCAATGGAGACTGGAG
ACGCAGAGGATGAATATGCCAGAGAAGAAGAACTGGCATCAATGGGAGCACAAATAACAAGCTACTCAAG
GTTTTATGAAAGTGGCAATTCCCTTCGAGCTGAGAACCAAAGTACAAATTTGCCTGGACCAGGAAGAAAC
CTGCCAAATTCACAAATGGTGAATATTAGAGATTTGTCAGACAATGTACTGTATCAGACTAGAGACTACC
ATTTGACACCACGGACCTCATTGCATACAGCATCTAGTACTATGTACAGTAATACTAATCCATCACGGAG
TAATTTTTCTCCACATTTTGTATCATCAAACCAACTGAGGTTATCACAAAACCAAAACAATTACCAGATT
TCAGGAAACCTTTCTGTGCCTTGGATTACAGGGTGTTCTAGGAAAAGAGCACTACAGGACCGCACTCAAT
TCAGTGACCGAGACTTGGCTACTCTTAAGAAGTACTGGGACAATGGTATGACCAGCCTGGGCTCTGTATG
TAGAGAGAAGATTGAAGCTGTTGCAATTGAATTAAATGTCGACTGTGAAATAGTTCGGACTTGGATTGGG
AATCGAAGAAGAAAATACCGTTTAATGGGAATTGAAGTTCCACCTCCAAGAGGAGGCCCTGCTGATTTCT
CTGAGCAGCCTGAGTCTGGTTCTTTGTCTGCACTCACACCAGGAGAGGAAGCTGGGCCTGAAGTAGGAGA
GGATAATGACAGAAATGATGAAGTGTCCATCTGTTTGTCCGAAGCAAGCTCTCAAGAGGAGTCCAATGAA
CTTATCCCAAATGAGACCAGGGCACATAAGGATGAAGAGCACCAGGCAGTATCTGCAGATAATGTGAAAA
TAGAAATTATCGATGATGAAGAAAGTGACATGATAAGCAATTCTGAGGTAGAACAAGAAAATTCTCTCCT
GGATTACAAGAATGAAGAAGTCAGATTTATTGAAAATGAGCTAGAGATTCAAAAGCAAAAATACTTTAAG
CTCCAGTCTTTTGTTAGAAACCTGATTCTCGCTATGAAAGCTGATGATAAAGACCAGCAGCAGGCACTGC
TGTCAGATTTACCTCCAGAATTAGAAGAGATGGATTGCAGTCATGCCTCGCCGGATCCTGATGATACCTC
ACTCAGTGTGTCTTCTTTATCAGAGAAAAATGCCTCAGACAGCTTGTGA

Translation (692 aa):
MNLRSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLDFSVVRTWVGNKRRKMSSKSCESGAAG
TVSGTSLAAPDITVRNVVNIARPSSQQSSWTSANNDVIVTGIYSPVSSSSKQGTTKHTNTQITEAHKIPI
QKAANKNDTELQLHIPVQRQVAHCKNASVLLGEKTIILSRQTSVLNAGNSVYNHTKKSYGSSPVQASEMT
VPQKPSVCQRPCKIEPVGIQRSYKPEHAGLASHNLCGQKPTIRDPCCRTQNLEIREVFSLAVSDYPQRIL
GGNSTQKPASAEGTCLSIAMETGDAEDEYAREEELASMGAQITSYSRFYESGNSLRAENQSTNLPGPGRN
LPNSQMVNIRDLSDNVLYQTRDYHLTPRTSLHTASSTMYSNTNPSRSNFSPHFVSSNQLRLSQNQNNYQI
SGNLSVPWITGCSRKRALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVAIELNVDCEIVRTWIG
NRRRKYRLMGIEVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEASSQEESNE
LIPNETRAHKDEEHQAVSADNVKIEIIDDEESDMISNSEVEQENSLLDYKNEEVRFIENELEIQKQKYFK
LQSFVRNLILAMKADDKDQQQALLSDLPPELEEMDCSHASPDPDDTSLSVSSLSEKNASDSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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