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Report for CCDS52682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52682.1 Public Mus musculus 8 Cdh13 23 108 98 CCDS HistoryNCBI Gene:12554Re-query CCDS DB by CCDS ID:52682.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52682.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117160.1 ENSMUSP00000113527.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117160.1Link to Ensembl Protein Viewer:ENSMUSP00000113527.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117160Re-query CCDS DB by Protein ID:ENSMUSP00000113527
Original member Current member NCBI NM_019707.5 NP_062681.2 Accepted alive Link to Nucleotide Sequence:NM_019707.5Link to Protein Sequence:NP_062681.2Re-query CCDS DB by Nucleotide ID:NM_019707Re-query CCDS DB by Protein ID:NP_062681Link to BLAST:NP_062681.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062681.2 714 Q9WTR5 714 100% 0 0

Chromosomal Locations for CCDS 52682.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 118283854 118283898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118505604 118505715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118675018 118675226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118757368 118757484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118851719 118851871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 118968049 118968193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119095185 119095363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119198855 119198995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119236784 119236966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119242190 119242443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119288586 119288728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119312502 119312735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119313973 119314194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119323395 119323402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2145 nt):
ATGCAGCCGAGAACTCCGCTCACCCTGTGCGTCCTGCTGTCCCAGGTGCTCCTGGTCACGTCTGCAGATG
ATCTGGAGTGCACCCCTGGATTCCAGCGGAAAGTGTTACACATCCACCAGCCTGCCGAATTCATCGAGGA
CCAGCCTGTCCTAAACTTGACCTTCAATGACTGCAAGGGCAACGAGAAGCTGCACTACGAGGTCTCAAGC
CCACACTTCAAGGTGAACAGCGACGGCACCTTAGTGGCTCTCAGGAACATCACTGCGGTGGGCAGGACCC
TGTTTGTCCATGCGAGGACTCCTCATGCTGAAGACATGGCAGAACTCGTGATTGTCGGGGGCAAAGACAT
CCAGGGCTCCTTGCAGGATATCTTTAAATTTGCAAGGACATCTCCTGTCCCAAGACAAAAGAGGTCCATT
GTGGTGTCCCCCATCTTGATCCCAGAGAACCAGAGACAGCCCTTCCCCAGAGATGTCGGCAAGGTAGTCG
ATAGCGACAGACCCGAAGGGTCCAAGTTCCGGCTCACCGGGAAGGGAGTGGATCAAGACCCTAAAGGAAC
TTTCAGAATCAATGAGAACACAGGCAGTGTCTCCGTGACACGGACCCTGGACAGAGAAACGATCGCTACT
TATCAACTGTATGTGGAAACCACGGATGCCAGTGGCAAAACTCTGGAAGGGCCAGTGCCTCTGGAAGTCA
TTGTGATTGACCAGAACGACAACAGACCCATCTTCCGGGAAGGCCCTTACATCGGCCATGTCATGGAAGG
GTCACCCACAGGGACCACGGTGATGCGGATGACAGCGTTTGATGCAGATGACCCGGCTACTGACAATGCT
CTCCTGAGGTACAACATCCGTCAGCAGACGCCTGACAAGCCATCTCCTAACATGTTCTACATCGATCCCG
AGAAAGGAGACATTGTCACCGTGGTGTCACCTGCGCTGCTGGACCGGGAGACTCTGGAAAACCCCAAGTA
TGAACTGATCATCGAAGCTCAAGATATGGCAGGATTGGATGTCGGACTGACAGGCACAGCCACAGCCACC
ATCGTGATCGATGACAAAAATGATCACTCACCAAAATTCACCAAGAAAGAGTTTCAAGCCACAGTGGAGG
AGGGAGCTGTGGGGGTCATTGTCAACTTGACAGTGGAAGACAAAGACGACCCTACCACAGGAGCCTGGAG
GGCTGCATACACCATCATCAATGGAAATCCTGGGCAGAGCTTCGAGATCCACACCAACCCACAGACCAAC
GAGGGCATGCTCTCTGTGGTCAAGCCCCTGGACTATGAGATCTCTGCCTTTCACACCCTGCTGATCAAAG
TGGAGAATGAGGACCCACTGGTACCCGACGTCTCCTATGGCCCCAGCTCCACGGCAACTGTCCACATCAC
AGTCCTGGATGTCAACGAGGGACCAGTCTTCTACCCGGACCCCATGATGGTGACTAAACAGGAGAACATC
TCTGTGGGCAGTGTGCTGCTGACAGTGAATGCCACAGACCCAGACTCCCTGCAACATCAAACTATCAGGT
ACTCTATCTACAAGGACCCAGCAGGCTGGCTGAGTATCAACCCCATCAATGGAACGGTGGACACCACAGC
TGTGTTGGACCGGGAGTCCCCATTCGTCCACAACAGTGTGTACACGGCCCTGTTCCTGGCCATCGACAGT
GGCAACCCTCCTGCAACTGGCACCGGGACTCTGCTGATAACCCTAGAGGACATTAATGACAACGCTCCTG
TCATTTACCCAACTGTGGCTGAGGTCTGCGATGATGCCAGAAACCTCAGCGTGGTCATTCTGGGGGCTTC
GGACAAGGACCTTCACCCCAACACAGACCCCTTCAAGTTTGAGATTCATAAACAGACAGTCCCTGATAAA
GTCTGGAAGATCTCCAAAATCAACAACACCCACGCCCTCGTGAGCCTTCTTCAGAATCTGAACAAGGCAA
ACTACAACCTGCCCATCATGGTGACAGATTCAGGGAAGCCACCCATGACGAACATCACGGACCTCAGGGT
GCAGGTGTGCTCTTGCAAGAACTCCAAAGTGGACTGCAACGGGGCTGGGGCCCTGCACCTCAGCCTCAGC
TTGCTGCTGCTCTTCTCTCTCCTCAGCTTATTGTCAGGTCTGTGA

Translation (714 aa):
MQPRTPLTLCVLLSQVLLVTSADDLECTPGFQRKVLHIHQPAEFIEDQPVLNLTFNDCKGNEKLHYEVSS
PHFKVNSDGTLVALRNITAVGRTLFVHARTPHAEDMAELVIVGGKDIQGSLQDIFKFARTSPVPRQKRSI
VVSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT
YQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNA
LLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATAT
IVIDDKNDHSPKFTKKEFQATVEEGAVGVIVNLTVEDKDDPTTGAWRAAYTIINGNPGQSFEIHTNPQTN
EGMLSVVKPLDYEISAFHTLLIKVENEDPLVPDVSYGPSSTATVHITVLDVNEGPVFYPDPMMVTKQENI
SVGSVLLTVNATDPDSLQHQTIRYSIYKDPAGWLSINPINGTVDTTAVLDRESPFVHNSVYTALFLAIDS
GNPPATGTGTLLITLEDINDNAPVIYPTVAEVCDDARNLSVVILGASDKDLHPNTDPFKFEIHKQTVPDK
VWKISKINNTHALVSLLQNLNKANYNLPIMVTDSGKPPMTNITDLRVQVCSCKNSKVDCNGAGALHLSLS
LLLLFSLLSLLSGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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