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Report for CCDS22571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22571.1 Public Mus musculus 8 Cdh11 23 108 98 CCDS HistoryNCBI Gene:12552Re-query CCDS DB by CCDS ID:22571.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075190.4 ENSMUSP00000074681.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075190.4Link to Ensembl Protein Viewer:ENSMUSP00000074681.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075190Re-query CCDS DB by Protein ID:ENSMUSP00000074681
Original member NCBI NM_009866.5 NP_033996.4 Updated not alive Link to Nucleotide Sequence:NM_009866.5Link to Protein Sequence:NP_033996.4Re-query CCDS DB by Nucleotide ID:NM_009866Re-query CCDS DB by Protein ID:NP_033996
Current member NCBI NM_009866.6 NP_033996.4 Accepted alive Link to Nucleotide Sequence:NM_009866.6Link to Protein Sequence:NP_033996.4Re-query CCDS DB by Nucleotide ID:NM_009866Re-query CCDS DB by Protein ID:NP_033996Link to BLAST:NP_033996.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033996.4 796 P55288 796 100% 0 0

Chromosomal Locations for CCDS 22571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 102634314 102634810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102636928 102637179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102647463 102647580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102647798 102647931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102650623 102650759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102658189 102658442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102664604 102664791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102667998 102668165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102670053 102670172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102673812 102674106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102679612 102679839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2391 nt):
ATGAAGGAGAACTACTGTTTACAAGCTGCCCTGGTGTGCCTGAGCATGCTATACCACAGCCAGGCGTTTG
CT
CTGGAGCGACGAAGCCACCTGCATCCCTCTTTCCATGGACACCATGAGAAGGGCAAGGAGGGGCAGGT
G
CTGCAACGCTCCAAGAGAGGCTGGGTCTGGAACCAATTCTTTGTGATAGAAGAGTACACCGGGCCTGAC
CCT
GTGCTGGTGGGCAGGCTTCATTCTGACATTGACTCCGGTGATGGGAACATTAAATACATTCTCTCAG
GT
GAAGGAGCGGGAACCATTTTTGTGATTGATGACAAATCAGGGAACATTCATGCCACCAAGACATTGGA
C
CGAGAGGAGAGAGCCCAGTACACACTGATGGCTCAGGCGGTGGACAGGGACACCAACAGACCACTGGAG
CCA
CCTTCAGAATTCATTGTTAAGGTCCAGGACATTAATGACAACCCTCCAGAGTTTCTGCATGAAATCT
AT
CATGCCAATGTGCCTGAGAGGTCCAATGTGGGAACATCAGTTATCCAAGTGACAGCCTCTGATGCAGA
T
GATCCCACCTATGGAAATAGTGCCAAGTTAGTGTATAGCATCCTTGAAGGACAACCCTATTTCTCGGTG
GAG
GCCCAAACAGGTATCATCAGGACAGCCCTTCCCAATATGGACAGAGAAGCCAAGGAGGAGTACCACG
TG
GTGATCCAGGCCAAGGACATGGGTGGACACATGGGTGGACTCTCAGGGACAACCAAAGTGACGATCAC
T
CTGACTGATGTCAACGACAACCCACCAAAGTTTCCACAGAGCGTGTACCAGATGTCTGTATCAGAAGCA
GCT
GTCCCGGGGGAGGAAGTAGGAAGGGTGAAGGCTAAAGACCCAGACATTGGAGAAAATGGCTTAGTCA
CA
TACAATATCGTTGATGGAGACGGCATAGAACTGTTTGAAATTACAACAGACTATGAAACACAGGATGG
T
GTGGTGAAGCTGAAAAAGCCTGTAGATTTTGAAACCAAAAGAGCTTATAGCTTGAAGATAGAGGCCGCC
AAT
GTTCACATTGATCCGAAGTTCATCAGCAATGGACCTTTCAAGGACACTGTGACCGTCAAGATTTCAG
TA
GAAGATGCCGATGAGCCTCCCATGTTCTTGGCCCCAAGTTATATCCATGAAGTTCAAGAAAATGCAGC
T
GCTGGCACTGTGGTTGGGAGAGTACATGCCAAAGACCCAGATGCTGCCAACAGCCCAATAAGGTATTCA
ATT
GATCGTCATACTGACCTCGACAGGTTTTTCACGATTAATCCAGAAGATGGTTTTATTAAAACTACGA
AA
CCTCTAGATAGGGAAGAAACTGCCTGGCTCAACATCTCTGTCTTCGCAGCAGAAATTCACAACAGACA
T
CAGGAAACCAAAGTCCCAGTGGCCATCAGGGTCCTGGATGTCAATGACAATGCTCCTAAGTTTGCTGCC
CCT
TATGAAGGTTTTATCTGTGAGAGCGATCACCCCAAGGCACTCTCCAACCAGCCAATAGTTACAGTTA
GT
GCAGATGACCAGGACGACACAGCCAATGGACCAAGATTTATCTTCAGCCTACCCCCTGAAATCATGCA
C
AACCCAAACTTCACAGTAAGAGACAACAGAGATAACACTGCAGGAGTATATGCCCGACGTGGAGGGTTC
AGT
CGGCAGAAGCAGGACTTCTACCTCCTGCCCATTGTGATCAGTGATGGTGGCATTCCACCTATGAGTA
GC
ACCAATACCCTCACTATCAAAGTCTGTGGCTGTGATGTGAATGGGGCACTGTTGTCCTGTAACGCTGA
A
GCCTACATCCTGAATGCCGGTCTGAGCACTGGGGCACTGATCGCCATCCTTGCCTGCATCGTCATTCTT
CTG
GTCATCGTTGTGCTGTTTGTTACCCTGAGGAGGCAAAAGAAAGAACCACTCATTGTATTTGAAGAGG
AG
GATGTCCGTGAGAACATCATAACCTATGATGATGAAGGGGGTGGTGAGGAAGACACTGAAGCCTTCGA
C
ATAGCCACCCTGCAGAATCCTGACGGCATCAATGGATTTATCCCTCGCAAAGATATCAAACCTGAGTAT
CAG
TATATGCCTAGACCTGGGCTGCGACCAGCACCCAACAGTGTGGATGTGGACGACTTCATCAACACAA
GA
ATACAGGAGGCAGATAATGATCCCACAGCCCCTCCCTATGACTCCATCCAAATCTATGGTTATGAGGG
C
CGGGGTTCCGTGGCTGGGTCCCTGAGCTCCTTGGAGTCTGCCACGACAGACTCAGACCTGGACTACGAC
TAT
CTACAGAACTGGGGACCTCGTTTTAAGAAACTGGCAGACTTGTATGGCTCCAAAGACACTTTTGATG
AT
GACTCTTAA


Translation (796 aa):
MKENYCLQAALVCLSMLYHSQAFALERRSHLHPSFHGHHEKGKEGQVLQRSKRGWVWNQFFVIEEYTGPD
P
VLVGR
LHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLE
P
PSEFIVKVQDINDNPPEFLHEIYHANVPERSNV
GTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSV
E
AQT
GIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEA
A
VPGEEVGRVKAKDPDIGENGLVTYNIVDGDGIELFEITTDYETQDGVVKLKK
PVDFETKRAYSLKIEAA
N
VHIDPKFISNGPFKDTVTVKISVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPI
RYS
I
DRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNISVFAAEI
HNRHQETKVPVAIRVLDVNDNAPKFAA
P
YEGFICESDHPKALSNQ
PIVTVSADDQDDTANGPRFIFSLPPEIMHNPNFTVRDNRDNTAGVYARRGGF
S
RQKQDFYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGALLSCNAEAYILNAGLSTGALIAILACIVIL
L
VIVVLFVTLRRQKKEPLIVFEEEDVRENIITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEY
Q
YMPRPGLRPAPNSVDVDDFINTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYD
Y
LQNWGPRFKKLADLYGSKDTFDDDS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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