CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS22571.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
22571.1 |
Public |
Mus musculus |
8 |
Cdh11 |
23 |
108 |
98 |
|
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 22571.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENSMUST00000075190.4 |
ENSMUSP00000074681.3 |
Accepted |
alive |
|
|
|
NCBI |
NM_009866.5 |
NP_033996.4 |
Updated |
not alive |
|
|
|
NCBI |
NM_009866.6 |
NP_033996.4 |
Accepted |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_033996.4 |
796 |
P55288 |
796 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 22571.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2391 nt): ATGAAGGAGAACTACTGTTTACAAGCTGCCCTGGTGTGCCTGAGCATGCTATACCACAGCCAGGCGTTTG CTCTGGAGCGACGAAGCCACCTGCATCCCTCTTTCCATGGACACCATGAGAAGGGCAAGGAGGGGCAGGT GCTGCAACGCTCCAAGAGAGGCTGGGTCTGGAACCAATTCTTTGTGATAGAAGAGTACACCGGGCCTGAC CCTGTGCTGGTGGGCAGGCTTCATTCTGACATTGACTCCGGTGATGGGAACATTAAATACATTCTCTCAG GTGAAGGAGCGGGAACCATTTTTGTGATTGATGACAAATCAGGGAACATTCATGCCACCAAGACATTGGA CCGAGAGGAGAGAGCCCAGTACACACTGATGGCTCAGGCGGTGGACAGGGACACCAACAGACCACTGGAG CCACCTTCAGAATTCATTGTTAAGGTCCAGGACATTAATGACAACCCTCCAGAGTTTCTGCATGAAATCT ATCATGCCAATGTGCCTGAGAGGTCCAATGTGGGAACATCAGTTATCCAAGTGACAGCCTCTGATGCAGA TGATCCCACCTATGGAAATAGTGCCAAGTTAGTGTATAGCATCCTTGAAGGACAACCCTATTTCTCGGTG GAGGCCCAAACAGGTATCATCAGGACAGCCCTTCCCAATATGGACAGAGAAGCCAAGGAGGAGTACCACG TGGTGATCCAGGCCAAGGACATGGGTGGACACATGGGTGGACTCTCAGGGACAACCAAAGTGACGATCAC TCTGACTGATGTCAACGACAACCCACCAAAGTTTCCACAGAGCGTGTACCAGATGTCTGTATCAGAAGCA GCTGTCCCGGGGGAGGAAGTAGGAAGGGTGAAGGCTAAAGACCCAGACATTGGAGAAAATGGCTTAGTCA CATACAATATCGTTGATGGAGACGGCATAGAACTGTTTGAAATTACAACAGACTATGAAACACAGGATGG TGTGGTGAAGCTGAAAAAGCCTGTAGATTTTGAAACCAAAAGAGCTTATAGCTTGAAGATAGAGGCCGCC AATGTTCACATTGATCCGAAGTTCATCAGCAATGGACCTTTCAAGGACACTGTGACCGTCAAGATTTCAG TAGAAGATGCCGATGAGCCTCCCATGTTCTTGGCCCCAAGTTATATCCATGAAGTTCAAGAAAATGCAGC TGCTGGCACTGTGGTTGGGAGAGTACATGCCAAAGACCCAGATGCTGCCAACAGCCCAATAAGGTATTCA ATTGATCGTCATACTGACCTCGACAGGTTTTTCACGATTAATCCAGAAGATGGTTTTATTAAAACTACGA AACCTCTAGATAGGGAAGAAACTGCCTGGCTCAACATCTCTGTCTTCGCAGCAGAAATTCACAACAGACA TCAGGAAACCAAAGTCCCAGTGGCCATCAGGGTCCTGGATGTCAATGACAATGCTCCTAAGTTTGCTGCC CCTTATGAAGGTTTTATCTGTGAGAGCGATCACCCCAAGGCACTCTCCAACCAGCCAATAGTTACAGTTA GTGCAGATGACCAGGACGACACAGCCAATGGACCAAGATTTATCTTCAGCCTACCCCCTGAAATCATGCA CAACCCAAACTTCACAGTAAGAGACAACAGAGATAACACTGCAGGAGTATATGCCCGACGTGGAGGGTTC AGTCGGCAGAAGCAGGACTTCTACCTCCTGCCCATTGTGATCAGTGATGGTGGCATTCCACCTATGAGTA GCACCAATACCCTCACTATCAAAGTCTGTGGCTGTGATGTGAATGGGGCACTGTTGTCCTGTAACGCTGA AGCCTACATCCTGAATGCCGGTCTGAGCACTGGGGCACTGATCGCCATCCTTGCCTGCATCGTCATTCTT CTGGTCATCGTTGTGCTGTTTGTTACCCTGAGGAGGCAAAAGAAAGAACCACTCATTGTATTTGAAGAGG AGGATGTCCGTGAGAACATCATAACCTATGATGATGAAGGGGGTGGTGAGGAAGACACTGAAGCCTTCGA CATAGCCACCCTGCAGAATCCTGACGGCATCAATGGATTTATCCCTCGCAAAGATATCAAACCTGAGTAT CAGTATATGCCTAGACCTGGGCTGCGACCAGCACCCAACAGTGTGGATGTGGACGACTTCATCAACACAA GAATACAGGAGGCAGATAATGATCCCACAGCCCCTCCCTATGACTCCATCCAAATCTATGGTTATGAGGG CCGGGGTTCCGTGGCTGGGTCCCTGAGCTCCTTGGAGTCTGCCACGACAGACTCAGACCTGGACTACGAC TATCTACAGAACTGGGGACCTCGTTTTAAGAAACTGGCAGACTTGTATGGCTCCAAAGACACTTTTGATG ATGACTCTTAA
Translation (796 aa): MKENYCLQAALVCLSMLYHSQAFALERRSHLHPSFHGHHEKGKEGQVLQRSKRGWVWNQFFVIEEYTGPD PVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLE PPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSV EAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDVNDNPPKFPQSVYQMSVSEA AVPGEEVGRVKAKDPDIGENGLVTYNIVDGDGIELFEITTDYETQDGVVKLKKPVDFETKRAYSLKIEAA NVHIDPKFISNGPFKDTVTVKISVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVHAKDPDAANSPIRYS IDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNISVFAAEIHNRHQETKVPVAIRVLDVNDNAPKFAA PYEGFICESDHPKALSNQPIVTVSADDQDDTANGPRFIFSLPPEIMHNPNFTVRDNRDNTAGVYARRGGF SRQKQDFYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGALLSCNAEAYILNAGLSTGALIAILACIVIL LVIVVLFVTLRRQKKEPLIVFEEEDVRENIITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEY QYMPRPGLRPAPNSVDVDDFINTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATTDSDLDYD YLQNWGPRFKKLADLYGSKDTFDDDS
|