NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17697.1 Public Mus musculus 3 Rsbn1 23 108 98 CCDS HistoryNCBI Gene:229675Re-query CCDS DB by CCDS ID:17697.1Re-query CCDS DB by GeneID:229675See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17697.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051139.12 ENSMUSP00000058934.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051139.12Link to Ensembl Protein Viewer:ENSMUSP00000058934.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051139Re-query CCDS DB by Protein ID:ENSMUSP00000058934
Original member Current member EBI ENSMUST00000068879.10 ENSMUSP00000069246.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068879.10Link to Ensembl Protein Viewer:ENSMUSP00000069246.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000068879Re-query CCDS DB by Protein ID:ENSMUSP00000069246
Original member Current member NCBI NM_001356556.1 NP_001343485.1 Accepted alive Link to Nucleotide Sequence:NM_001356556.1Link to Protein Sequence:NP_001343485.1Re-query CCDS DB by Nucleotide ID:NM_001356556Re-query CCDS DB by Protein ID:NP_001343485Link to BLAST:NP_001343485.1
Original member Current member NCBI NM_172684.3 NP_766272.2 Accepted alive Link to Nucleotide Sequence:NM_172684.3Link to Protein Sequence:NP_766272.2Re-query CCDS DB by Nucleotide ID:NM_172684Re-query CCDS DB by Protein ID:NP_766272Link to BLAST:NP_766272.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343485.1 795 Q80T69 795 100% 0 0
NP_766272.2 795 Q80T69 795 100% 0 0

Chromosomal Locations for CCDS 17697.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103914451 103915153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103928351 103929024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103953637 103953774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103954105 103954247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103960003 103960170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103961473 103961581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103962160 103962612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGTTCAGGTCTACGAGAACGACCGATCAGTGGAGGGTGGGGGAGAGACTCCAATGCCCAGCGGGCCATG
CGCGGGCAGCGCTTGCGCGAACCGCGGACGGGGGGGCGGTCGGGCCATTTAAATGTGTGTTTGTGGGTGA
AATGGCTGCGCAGGTCGGAGCGGTTCGCGTAGTACGGGCGGTGGCGGCGCAGGAGGAGCCGGACAAAGAA
GGGAAGGAGAAACCCCATGTTGGGGTTTCGCCGCGGGGAGTGAAGCGGCAGCGCCGGGCGAGCAGCGGGG
GTTCTCAGGAGAAGCGGGGGCGGCCGAGCCAGGACCCCCCTCTCGCTCCCCCTCATCGGCGGCGTCGTAG
CCGCCAACATCCCGGGCCGCTGCCTCCAACGAATGCCGCCCCAACCGTCCCGGGCCCTGTTGAACCTCTG
CTCCTGCCGCCTCCGCCGCCACCGTCGCTGGCACCCGCCGGGCCCACTGTCGCTGCCCCGCTCCCGGCCC
CGGGCACCTCGGCCCTCTTCACCTTCTCGCCTCTGACGGTGAGCGCGGCCGGGCCCAAGCATAAGGGCCA
CAAGGAGCGGCACAAGCACCATCACCACCGCGGCTCCGATGGTGACCCCGGCGCCTGCGTTCCGGGCGAT
CTCAAGCACAAGGACAAGCAGGAAAACGGCGAAAGGAGCGGAGGGGTGCCTCTGATCAAGGCCCCCAAGA
GAGAAACAGCAGATGAAAATGGTAAAACCCAGAGAGCTGATGATTTTGTCTTGAAGAAAATAAAGAAGAA
AAAGAAAAAGAAACATCGAGAAGACATGAGAGGAAGACGCCTTAAAATGTACAATAAGGAAGTACAAACC
GTCTGTGCTGGCCTGACCCGCATCAGCAAAGAAATTCTCACCCAAGGACAGCTAAATAGCACTTCAGGAG
TTAATAAGGAGTCCTTCAGGTATTTGAAGGATGAACAGCTGTGCAGATTAAATTTGGGCATGCAAGAATA
TCGGGTGCCCCAGGGAGTACAGACACCTTTTACAACGCACCAAGAACATTCTATTCGCAGAAATTTCTTA
AAAACAGGTACTAAATTTAGCAACTTTATTCACGAAGAACACCAGTCCAATGGGGGTGCTCTTGTCCTTC
ATGCATACATGGACGAACTCTCATTTTTGTCTCCAATGGAGATGGAGAGATTTTCTGAGGAGTTTCTTGC
TTTGACATTCAGTGAAAATGAGAAAAACGCTGCGTACTATGCGTTAGCAATAGTGCATGGAGCGGCCGCT
TATCTCCCAGACTTCTTGGACTACTTTGCTTTTAATTTTCCCAACACTCCAGTGAAAATGGAAATTTTGG
GCAAGAAAGATATTGAAACAACCACCATTTCAAATTTTCATACTCAGGTCAACAGGACATATTGCTGTGG
TACCTACCGAGCAGGTCCTATGCGGCAGATAAGTCTTGTTGGAGCAGTAGATGAAGAAGTTGGTGATTAT
TTCCCAGAGTTCCTAGATATGCTAGAAGAATCACCATTTCTGAAAATGACTTTGCCCTGGGGTACACTTT
CCAGCCTCCAGCTACAATGTAGGTCTCAGAGCGATGACGGGCCTATAATGTGGGTGAGGCCAGGAGAACA
GATGATCCCTACAGCAGATATGCCAAAGTCACCCTTCAAAAGACGACGATCAATGAATGAAATTAAAAAT
CTCCAGTACCTACCTCGGACAAGTGAACCCCGAGAAGTCCTCTTTGAAGACAGGACCAGAGCTCATGCTG
ATCATGTAGGTCAGGGGTTTGACTGGCAAAGTACGGCTGCTGTTGGGGTTTTGAAGGCTGTACAATTCGG
TGAATGGAGTGATCAGCCTCGCATAACCAAAGATGTGATTTGTTTTCATGCTGAGGATTTTACTGATGTT
GTACAGAGACTTCAGTTAGACCTTCATGAACCTCCAGTTTCTCAGTGTGTACAGTGGGTGGATGAAGCAA
AACTAAACCAAATGAGGCGAGAAGGCATTCGCTATGCTAGAATTCAGCTTTGCGACAATGATATCTACTT
CATCCCTAGAAATGTCATTCATCAGTTCAAAACAGTGTCAGCAGTATGCAGCCTAGCCTGGCATATAAGG
CTTAAACAATACCACCCTGTTGTGGAAACCGCTCAAAACACAGAGAGCAATTCCAACATGGATTGTGGTT
TAGAAGTTGACTCCCAGTGTGTGAGAATAAAAACTGAATCTGAGGAAAGATGCACAGAGATGCAGCTTTT
GACAACTGCTTCACCGTCTTTCCCACCTCCATCAGAACTTCATCTACAGGATCTGAAGACTCAGCCTCTT
CCAGTTTTCAAGGTGGAGAGCAGACTGGACTCTGACCAGCAACACAGTCTGCAGGCACATCCAAGCACTC
CTGTGTGA

Translation (795 aa):
MFRSTRTTDQWRVGERLQCPAGHARAALARTADGGAVGPFKCVFVGEMAAQVGAVRVVRAVAAQEEPDKE
GKEKPHVGVSPRGVKRQRRASSGGSQEKRGRPSQDPPLAPPHRRRRSRQHPGPLPPTNAAPTVPGPVEPL
LLPPPPPPSLAPAGPTVAAPLPAPGTSALFTFSPLTVSAAGPKHKGHKERHKHHHHRGSDGDPGACVPGD
LKHKDKQENGERSGGVPLIKAPKRETADENGKTQRADDFVLKKIKKKKKKKHREDMRGRRLKMYNKEVQT
VCAGLTRISKEILTQGQLNSTSGVNKESFRYLKDEQLCRLNLGMQEYRVPQGVQTPFTTHQEHSIRRNFL
KTGTKFSNFIHEEHQSNGGALVLHAYMDELSFLSPMEMERFSEEFLALTFSENEKNAAYYALAIVHGAAA
YLPDFLDYFAFNFPNTPVKMEILGKKDIETTTISNFHTQVNRTYCCGTYRAGPMRQISLVGAVDEEVGDY
FPEFLDMLEESPFLKMTLPWGTLSSLQLQCRSQSDDGPIMWVRPGEQMIPTADMPKSPFKRRRSMNEIKN
LQYLPRTSEPREVLFEDRTRAHADHVGQGFDWQSTAAVGVLKAVQFGEWSDQPRITKDVICFHAEDFTDV
VQRLQLDLHEPPVSQCVQWVDEAKLNQMRREGIRYARIQLCDNDIYFIPRNVIHQFKTVSAVCSLAWHIR
LKQYHPVVETAQNTESNSNMDCGLEVDSQCVRIKTESEERCTEMQLLTTASPSFPPPSELHLQDLKTQPL
PVFKVESRLDSDQQHSLQAHPSTPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH