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Report for CCDS89648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89648.1 Public Mus musculus 3 Ssr2 23 108 98 CCDS HistoryNCBI Gene:66256Re-query CCDS DB by CCDS ID:89648.1Re-query CCDS DB by GeneID:66256See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89648.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192495.5 ENSMUSP00000141922.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192495.5Link to Ensembl Protein Viewer:ENSMUSP00000141922.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192495Re-query CCDS DB by Protein ID:ENSMUSP00000141922
Original member Current member NCBI NM_001356316.1 NP_001343245.1 Accepted alive Link to Nucleotide Sequence:NM_001356316.1Link to Protein Sequence:NP_001343245.1Re-query CCDS DB by Nucleotide ID:NM_001356316Re-query CCDS DB by Protein ID:NP_001343245Link to BLAST:NP_001343245.1

Chromosomal Locations for CCDS 89648.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88579880 88580034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88580974 88581038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88583737 88583885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88586865 88586942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88587881 88587991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGAGGCTGCTGGCGGTTGTGGTGTTGGCTCTGTTAGCCGTCAGTCAAGCAGAAGAAGGAGCCAGGCTTT
TGGCCTCCAAATCATTGCTCAACAGATACGCTGTGGAAGGGAGGGACCTGACCCTGCAGTATAACATCTA
CAACGTCGGCTCCAGCGCTGCATTAGATGTGGAATTATCTGACGATTCCTTCCCTCCAGAAGACTTCGGC
ATTGTCTCCGGCTTCCGGCATCTCTTCTTCATCCTTAACCCTTGGGCCAGCGCTAGCAATGTCTCCCACA
CAGTTGTCCTGCGTCCTCTCAAAGCTGGCTACTTCAACTTCACTTCTGCCACGATTACTTACCTGGCCCA
GGAGGATGGACCTGTTGTGATTGGCTCCACCAGCGCCCCTGGACAGGGAGGAATCCTCGCTCAGCGGGAG
TTTGACAGGAGATTCTCCCCCCATTTTCTGGACTGGGCAGCCTTTGGGGTCATGACCTTGCCCTCCATAG
GCATCCCCCTGCTCCTGTGGTATTCCAGCAAGAGGAAGTACGATACTCCCAAACCCAAGAAGAACTGA

Translation (185 aa):
MRLLAVVVLALLAVSQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFG
IVSGFRHLFFILNPWASASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPVVIGSTSAPGQGGILAQRE
FDRRFSPHFLDWAAFGVMTLPSIGIPLLLWYSSKRKYDTPKPKKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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