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Report for CCDS37384.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37384.1 Public Mus musculus 16 Cct8 23 108 98 CCDS HistoryNCBI Gene:12469Re-query CCDS DB by CCDS ID:37384.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37384.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026704.13 ENSMUSP00000026704.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026704.13Link to Ensembl Protein Viewer:ENSMUSP00000026704.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026704Re-query CCDS DB by Protein ID:ENSMUSP00000026704
Original member Current member NCBI NM_009840.3 NP_033970.3 Accepted alive Link to Nucleotide Sequence:NM_009840.3Link to Protein Sequence:NP_033970.3Re-query CCDS DB by Nucleotide ID:NM_009840Re-query CCDS DB by Protein ID:NP_033970Link to BLAST:NP_033970.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033970.3 548 P42932 548 100% 0 0

Chromosomal Locations for CCDS 37384.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 87483988 87484065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87484804 87484923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87485580 87485744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87485834 87485905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87486236 87486351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87486433 87486520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87486595 87486661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87487534 87487712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87488807 87488944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87490321 87490382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87490485 87490665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87491302 87491451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87493707 87493786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87494337 87494427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87495729 87495788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGGCGCTTCACGTCCCCAAGGCCCCGGGCTTTGCCCAGATGCTCAAGGATGGAGCCAAACATTTCTCGG
GATTAGAAGAGGCTGTGTATAGAAATATACAGGCCTGCAAGGAGCTTGCTCAGACTACTCGCACAGCGTA
CGGACCAAATGGAATGAATAAAATGGTCATCAATCGCCTGGAGAAGTTGTTTGTGACAAACGATGCAGCG
ACTATTTTAAGAGAGCTAGAAGTGCAGCATCCTGCTGCAAAGATGATAGTGATGGCCTCTCATATGCAAG
AACAAGAGGTTGGTGATGGCACAAACTTCGTTCTGGTGTTCGCTGGGGCTCTTCTGGAACTAGCTGAAGA
ACTTCTGAGGATTGGCCTGTCAGTATCAGAGGTAATATCGGGGTATGAAATAGCTTGCAAAAAAGCTCAT
GAGATCCTTCCTGAGTTGGTATGTTGTTCTGCCAAAAACCTTCGAGATGTTGATGAAGTGTCCTCTCTGC
TTCGAACCTCCATCATGAGTAAGCAGTACGGCAGCGAGACGTTTTTGGCCAAGCTTATTGCTCAGGCTTG
TGTTTCTATCTTTCCTGATTCTGGCAATTTCAATGTTGATAACATCAGAGTATGTAAGATTCTGGGCTCT
GGTATTTATTCATCCTCAGTATTACATGGCATGGTTTTTAAGAAGGAAACTGAAGGTGATGTGACATCTG
TCAAAGATGCAAAGATAGCTGTGTACTCTTGTCCGTTTGATGGCATGATAACAGAGACAAAGGGGACCGT
GCTGATTAAGACTGCCGAGGAGCTAATGAACTTCAGTAAGGGAGAGGAGAACCTCATGGATGCTCAGGTG
AAGGCCATTGCAGGCACTGGTGCAAATGTCATAGTAACAGGCGGCAAAGTGGCGGACATAGCTCTTCATT
ATGCTAACAAGTACAATATCATGTTGGTGAGACTGAACTCAAAGTGGGATCTCAGACGACTCTGTAAAAC
AGTTGGTGCCACAGCTCTTCCAAAATTGACTCCTCCCGTCCAAGAAGAAATGGGACATTGTGACAGTGTT
TACCTCTCAGAAGTTGGAGATACACAAGTGGTTGTTTTTAAGCATGAAAAAGAAGATGGTGCCATTTCTA
CTATAGTTCTTCGAGGTTCTACAGACAATCTGATGGATGACATAGAAAGGGCAGTAGATGATGGAGTTAA
TACTTTCAAAGTTCTCACAAGGGATAAGCGTCTTGTACCTGGAGGTGGAGCTACCGAAATTGAATTGGCT
AAACAAATCACATCATATGGAGAGACGTGTCCTGGGCTTGAACAGTATGCTATTAAGAAGTTTGCTGAAG
CGTTTGAAGCGATTCCACGGGCACTGGCAGAAAATTCTGGCGTGAAGGCCAATGAAGTTATCTCTAAACT
TTATTCCGTACACCAAGAAGGAAACAAAAATGTGGGGTTGGATATCGAGGCTGAAGTCCCTGCTGTAAAG
GATATGTTAGAAGCCAGTATTTTAGATACTTACTTGGGAAAATACTGGGCTATTAAACTGGCCACTAATG
CTGCAGTCACTGTACTAAGAGTGGATCAGATCATCATGGCAAAACCAGCTGGTGGGCCCAAACCTCCAAG
TGGGAAGAAGGACTGGGATGACGACCAGAATGACTGA

Translation (548 aa):
MALHVPKAPGFAQMLKDGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINRLEKLFVTNDAA
TILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVISGYEIACKKAH
EILPELVCCSAKNLRDVDEVSSLLRTSIMSKQYGSETFLAKLIAQACVSIFPDSGNFNVDNIRVCKILGS
GIYSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFSKGEENLMDAQV
KAIAGTGANVIVTGGKVADIALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPKLTPPVQEEMGHCDSV
YLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELA
KQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYSVHQEGNKNVGLDIEAEVPAVK
DMLEASILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKKDWDDDQND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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