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Report for CCDS28703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28703.1 Public Mus musculus 17 Ddr1 23 108 98 CCDS HistoryNCBI Gene:12305Re-query CCDS DB by CCDS ID:28703.1Re-query CCDS DB by GeneID:12305See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003628.12 ENSMUSP00000003628.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003628.12Link to Ensembl Protein Viewer:ENSMUSP00000003628.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000003628Re-query CCDS DB by Protein ID:ENSMUSP00000003628
Original member Current member EBI ENSMUST00000117301.7 ENSMUSP00000112570.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117301.7Link to Ensembl Protein Viewer:ENSMUSP00000112570.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117301Re-query CCDS DB by Protein ID:ENSMUSP00000112570
Original member Current member EBI ENSMUST00000119825.7 ENSMUSP00000113062.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119825.7Link to Ensembl Protein Viewer:ENSMUSP00000113062.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119825Re-query CCDS DB by Protein ID:ENSMUSP00000113062
Original member Current member EBI ENSMUST00000166980.8 ENSMUSP00000133047.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166980.8Link to Ensembl Protein Viewer:ENSMUSP00000133047.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000166980Re-query CCDS DB by Protein ID:ENSMUSP00000133047
Original member Current member NCBI NM_001198831.1 NP_001185760.1 Accepted alive Link to Nucleotide Sequence:NM_001198831.1Link to Protein Sequence:NP_001185760.1Re-query CCDS DB by Nucleotide ID:NM_001198831Re-query CCDS DB by Protein ID:NP_001185760Link to BLAST:NP_001185760.1
Original member Current member NCBI NM_001198833.1 NP_001185762.1 Accepted alive Link to Nucleotide Sequence:NM_001198833.1Link to Protein Sequence:NP_001185762.1Re-query CCDS DB by Nucleotide ID:NM_001198833Re-query CCDS DB by Protein ID:NP_001185762Link to BLAST:NP_001185762.1
Original member Current member NCBI NM_007584.3 NP_031610.1 Accepted alive Link to Nucleotide Sequence:NM_007584.3Link to Protein Sequence:NP_031610.1Re-query CCDS DB by Nucleotide ID:NM_007584Re-query CCDS DB by Protein ID:NP_031610Link to BLAST:NP_031610.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185760.1 911 Q03146-1 911 100% 0 0
NP_001185762.1 911 Q03146-1 911 100% 0 0
NP_031610.1 911 Q03146-1 911 100% 0 0

Chromosomal Locations for CCDS 28703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35682378 35682518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35682624 35682773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35683437 35683671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35684095 35684313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35684995 35685122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35685306 35685550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35686481 35686591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35687145 35687310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35688539 35688690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35688786 35688869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35689667 35689913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35689994 35690180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35691128 35691230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35691447 35691594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35692856 35693084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35693592 35693694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35693788 35693875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2736 nt):
ATGGGGACAGGGACCCTCTCATCTCTACTGCTGCTGCTACTCTTGGTGACAATTGGAGATGCTGACATGA
AGGGACATTTTGACCCTGCCAAGTGCCGCTATGCCCTGGGCATGCAGGACCGCACCATTCCTGACAGCGA
TATCTCTGTGTCCAGCTCCTGGTCGGACTCTACCGCTGCCCGCCACAGCAGGCTGGAAAGCAGTGATGGA
GATGGGGCTTGGTGCCCTGCAGGGCCTGTGTTCCCCAAAGAAGAGGAGTACTTGCAGGTGGACCTTCGTA
GGCTACACCTGGTGGCTCTGGTGGGCACCCAGGGCCGCCATGCTGGGGGTCTGGGCAAAGAGTTCTCCCG
AAGCTATCGGTTGCGTTACTCCCGAGATGGCCGCCGCTGGATGGACTGGAAGGACCGCTGGGGACAGGAG
GTGATTTCGGGTAACGAGGATCCCGGGGGAGTAGTGCTGAAGGACCTTGGGCCCCCCATGGTGGCCCGGC
TGGTCCGCTTCTACCCCAGGGCTGACCGGGTCATGAGTGTCTGTCTTCGGGTGGAGCTCTATGGCTGCCT
CTGGCGGGATGGACTCCTGTCATATACAGCCCCCGTGGGGCAGACCATGCAGTTATCTGAGGTGATGGTA
CATCTCAATGATTCCACTTACGATGGATATACTGCTGGAGGGCTGCAGTATGGCGGTCTGGGCCAGCTGG
CAGATGGCGTGGTGGGCCTGGATGATTTCAGGCAGAGCCAGGAGCTGCGGGTCTGGCCAGGCTATGACTA
TGTGGGATGGAGCAATCAGAGCTTCCCCACGGGCTACGTGGAGATGGAGTTTGAGTTTGATCGGTTGAGG
ACCTTCCAGACCATGCAGGTCCACTGTAACAACATGCACACTCTGGGAGCCCGCCTACCAGGCGGGGTGG
AATGCCGGTTTAAAAGGGGTCCCGCCATGGCCTGGGAAGGAGAGCCTGTCCGCCATGCTCTGGGAGGCAG
CCTTGGAGACCCCAGAGCCCGGGCCATCTCAGTGCCCCTGGGTGGCCACGTGGGCCGCTTTCTGCAGTGC
AGATTCCTCTTTGCAGGTCCTTGGTTACTCTTCAGTGAGATCTCTTTCATCTCAGATGTGGTGAACGACT
CCTCTGACACCTTCCCACCAGCCCCCTGGTGGCCACCTGGCCCGCCTCCCACCAACTTCAGCAGCTTGGA
GCTGGAGCCCCGGGGTCAACAGCCAGTGGCCAAGGCGGAGGGGAGCCCAACTGCCATCCTCATTGGCTGC
CTGGTGGCCATCATCCTGCTGCTGCTTCTCATCATCGCGCTGATGCTCTGGAGGCTGCACTGGCGCCGGC
TGCTCAGCAAGGCTGAGCGCCGCGTGTTGGAGGAGGAGCTGACGGTTCACCTTTCTGTCCCTGGGGACAC
CATCCTCATCAACAACCGCCCAGGACCCCGAGAGCCACCCCCTTACCAGGAGCCCCGGCCTCGGGGGACT
CCACCCCATTCTGCACCCTGCGTCCCCAACGGCTCTGCGTTGCTGCTCTCCAATCCGGCCTACCGCCTCC
TTCTGGCCACTTACGCCCGTCCCCCTCGAGGCCCGGGCCCCCCCACACCCGCCTGGGCCAAACCCACCAA
CACCCAGGCCTGCAGTGGGGACTATATGGAGCCCGAGAAGCCGGGTGCCCCGCTTCTACCCCCACCTCCC
CAGAACAGCGTCCCCCATTATGCCGAAGCTGACATTGTCACCCTGCAGGGCGTCACTGGGGGCAACACCT
ACGCTGTGCCTGCACTGCCCCCAGGGGCGGTTGGGGATGGGCCCCCCAGAGTGGATTTCCCTCGGTCACG
GCTCCGCTTCAAGGAGAAGCTTGGCGAGGGCCAATTTGGGGAGGTACACCTGTGTGAAGTAGAGGACCCG
CAAGATCTGGTCAGTAGTGACTTCCCTATCAGTGTGCACAAGGGACACCCCTTGCTGGTAGCAGTGAAGA
TCCTCCGGCCAGATGCCACCAAAAATGCCAGGAATGATTTCCTGAAGGAGGTAAAGATCATGTCACGGCT
GAAGGACCCAAACATCATCCGGCTCCTGGGTGTGTGTGTGCAGGATGACCCCCTCTGCATGATCACAGAC
TACATGGAGAACGGCGATCTGAACCAGTTCCTCAGTGCCCGCCAGCTGGAGAACAAGGCCACTCAGGGGC
TCTCTGGGGACACAGAGTCTGACCAGGGGCCCACAATCAGCTACCCTATGCTGTTACACGTGGGGGCCCA
GATCGCCTCTGGCATGCGTTATCTCGCCACGCTGAACTTTGTGCATCGGGACCTGGCCACCCGGAACTGC
TTGGTTGGGGAAAATTTCACCATCAAAATCGCCGACTTTGGCATGAGCCGGAATCTCTACGCTGGGGATT
ATTACCGTGTCCAGGGCCGGGCGGTGCTGCCCATCAGGTGGATGGCTTGGGAGTGCATTCTCATGGGGAA
GTTCACAACAGCCAGTGACGTTTGGGCCTTCGGAGTGACCCTGTGGGAGGTGCTGATGCTCTGCAGGTCC
CAGCCCTTTGGGCAGCTTACAGATGAGCAGGTTATCGAGAATGCCGGCGAGTTCTTCAGGGACCAGGGCC
GGCAGGTCTACTTGTCCAGGCCACCCGCCTGCCCACAGACCCTGTATGAGCTGATGCTCCGGTGTTGGAG
CCGGGAGCCCGAGCAGCGGCCGCCCTTCGCCCAGCTTCATCGGTTCCTGGCGGATGATGCGCTCAACACG
GTGTAA

Translation (911 aa):
MGTGTLSSLLLLLLLVTIGDADMKGHFDPAKCRYALGMQDRTIPDSDISVSSSWSDSTAARHSRLESSDG
DGAWCPAGPVFPKEEEYLQVDLRRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDGRRWMDWKDRWGQE
VISGNEDPGGVVLKDLGPPMVARLVRFYPRADRVMSVCLRVELYGCLWRDGLLSYTAPVGQTMQLSEVMV
HLNDSTYDGYTAGGLQYGGLGQLADGVVGLDDFRQSQELRVWPGYDYVGWSNQSFPTGYVEMEFEFDRLR
TFQTMQVHCNNMHTLGARLPGGVECRFKRGPAMAWEGEPVRHALGGSLGDPRARAISVPLGGHVGRFLQC
RFLFAGPWLLFSEISFISDVVNDSSDTFPPAPWWPPGPPPTNFSSLELEPRGQQPVAKAEGSPTAILIGC
LVAIILLLLLIIALMLWRLHWRRLLSKAERRVLEEELTVHLSVPGDTILINNRPGPREPPPYQEPRPRGT
PPHSAPCVPNGSALLLSNPAYRLLLATYARPPRGPGPPTPAWAKPTNTQACSGDYMEPEKPGAPLLPPPP
QNSVPHYAEADIVTLQGVTGGNTYAVPALPPGAVGDGPPRVDFPRSRLRFKEKLGEGQFGEVHLCEVEDP
QDLVSSDFPISVHKGHPLLVAVKILRPDATKNARNDFLKEVKIMSRLKDPNIIRLLGVCVQDDPLCMITD
YMENGDLNQFLSARQLENKATQGLSGDTESDQGPTISYPMLLHVGAQIASGMRYLATLNFVHRDLATRNC
LVGENFTIKIADFGMSRNLYAGDYYRVQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEVLMLCRS
QPFGQLTDEQVIENAGEFFRDQGRQVYLSRPPACPQTLYELMLRCWSREPEQRPPFAQLHRFLADDALNT
V


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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