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Report for CCDS17598.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
17598.1 |
Public |
Mus musculus |
3 |
Rfx5 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:53970](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:17598.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:53970](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 3 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 17598.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000029772.2 |
ENSMUSP00000029772.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000029772.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000029772.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000029772](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000029772](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000107255.7 |
ENSMUSP00000102876.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000107255.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000102876.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000107255](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000102876](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000107260.8 |
ENSMUSP00000102881.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000107260.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000102881.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000107260](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000102881](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000137088.7 |
ENSMUSP00000117963.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000137088.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000117963.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000137088](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000117963](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001355705.1 |
NP_001342634.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001355705.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001342634.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001355705](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001342634](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001355705.2 |
NP_001342634.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001355705.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001342634.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001355705](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001342634](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001342634.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_017395.3 |
NP_059091.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_017395.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_059091.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_017395](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_059091](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_017395.4 |
NP_059091.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_017395.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_059091.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_017395](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_059091](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_059091.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 17598.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1977 nt): ATGGCAGAAGATAAACCTGATGCTAAGAGCCCCAAGACTGGGGCAAGGCCCCAAGGTGGTGCTGACGCTG GAGAACCTACCACCCTCCTCCAAAGGCTCCGAGGTACCATTTCCAAGGCCGTGCAGAACAAAGTAGAGGG AATTCTGCAAGAAGTACAGAAATTCTCGGACAACGACAAGCTGTACCTCTACCTTCAGCTCCCATCGGGG CCCAGCGTTGGCGAGAAGAGCTCAGAGCCAAGTCTGCTCAGCAATGAGGAGTATATGTATGCCTATAGGT GGATCCGCAACCACCTGGAAGAGCACATGGATACCTGCCTGCCAAAGCAGAGCGTCTATGATGCCTATCG AAAGTACTGCGAGAGCCTCGCCTGTTGCCGCCCGCTCAGCACAGCCAACTTCGGTAAAATCATCAGAGAG ATCTTCCCTGACATCAAGGCCCGAAGACTCGGTGGCCGGGGCCAGTCCAAATATTGCTACAGTGGCATTC GAAGGAAGACCTTGGTATCCATGCCACCATTGCCTGGACTCGACTTGAAGGGATCTGAAAGTCCAGAAAT GGGCCCAGAAGTAAGCCCAGCACCTCGGGATGAACTGGTAGAAGCAGCCTGTGCCCTGACTTGTGACTGG GCAGAGCGGATCCTGAAGCGGTCCTTCAGTTCCATCGTCCAGGTCGCCCGCTACCTCCTGCAGCAGCATC TCATCTCTGCCCGGTCGGCACATGCTCATGTGCTTAAGGCCGGGGGGCTTGCTGAAGAGGATGAAAGAGC CCCTCGAGAACGGTCATTATGTAAGTCCAAGAATGTCGTAGAAAGCCTGGAAGGGGGAGGCCCTAAGAAA CCAGAGAGACCGGCCCAGCCTCCTAAAGAGCAAGAAGCCCGAGCTGGGACAGACCTTCCAGGGCGTGCAG AACGGAAGAAGAGTGTAATTGACAGCTCGGTTCCAGCAGCCAGTAAGCCACAAGTTAATGCTCTTGTGGC CCGACTGCCTGTGCTGCTTCCAAGAGCACCACGATCACTTATCACACCCATTTCAGGCACTCTGAAAGTA GCTACGCTGCCTCTACCCACTAGGGTTGGAGGGCCCCAGACAGCTGTGCCCATCATCAACATGATCTTAC CACCTGTTCCTACTTTGTCAGGGGCTGGGCCTGGGCCTGGGCCTGGCCTTGGGCCTAGGTTTGGGCCAGG GCCTGGGCTTGGGCCTGGGCCGGGGCCTGGTCTGGGGGCTGGTCTGGGGCCTGGGTTAGGGCCTGGGCTT GGAGCTGGACCAGGGCCCGGGCTTGGAGCTGGGCTTGGGGCTGGCCTAGGGCTTGGGCCTGGGCGAGTTC CACCTAGAGCACCCATTCTGCCTCGAGGTGCAGAGAACAGGGAGGTAGGCATAAGTAGTGATCCAAGACC TCATGACAAGGGTATCAAAAGGACAGCTGAAGTGCCTCTGAGTGAGGCCAGTGGGCAGGACCCACCAGTT AAAGAAATGAAGCACGAAACACAGGATACTACAGTAAGTGAAGCAAAAAGGAAGCGAGGACGCCCTCGAA AGAAGCCAGGAGGGAGTGGGGAAAGAAACGCTACTCCTGAGAAGTCTGCAGCTATTGTGAACTCTCCCCG ATCCCCAAGGCTACTCTGGGAGACATGGGGCTCAAAAAGAGAAAACAACTTCATTGGGAGACCAGAAGGA CCAGGGCCAGGGGGTGAGGCTGAGCGGGAAACAGTGCTTGTGCAAGGTCAGCAAGATGGTGCTGTTTCCA AAGGAGAAAGGAGCTTGAGTTCCCAGGAAGCCAAAGAAGCAGAAGATAAAATTCCTCCTGTCACTTCAAA AGTGAGTGTTATCAAGGGCAGAATTCAAAAAGAGGCTCTTCAGTTGGTAAAGGGAGAGGCTGATGCTGCA ACACAGGGCAACAAAGGGTTAAAGGGTCGTGTACTTCAAAGTTCCCTAACCCCTGAGCATAAAGACCCCA AAGCAACACCCCCATGA
Translation (658 aa): MAEDKPDAKSPKTGARPQGGADAGEPTTLLQRLRGTISKAVQNKVEGILQEVQKFSDNDKLYLYLQLPSG PSVGEKSSEPSLLSNEEYMYAYRWIRNHLEEHMDTCLPKQSVYDAYRKYCESLACCRPLSTANFGKIIRE IFPDIKARRLGGRGQSKYCYSGIRRKTLVSMPPLPGLDLKGSESPEMGPEVSPAPRDELVEAACALTCDW AERILKRSFSSIVQVARYLLQQHLISARSAHAHVLKAGGLAEEDERAPRERSLCKSKNVVESLEGGGPKK PERPAQPPKEQEARAGTDLPGRAERKKSVIDSSVPAASKPQVNALVARLPVLLPRAPRSLITPISGTLKV ATLPLPTRVGGPQTAVPIINMILPPVPTLSGAGPGPGPGLGPRFGPGPGLGPGPGPGLGAGLGPGLGPGL GAGPGPGLGAGLGAGLGLGPGRVPPRAPILPRGAENREVGISSDPRPHDKGIKRTAEVPLSEASGQDPPV KEMKHETQDTTVSEAKRKRGRPRKKPGGSGERNATPEKSAAIVNSPRSPRLLWETWGSKRENNFIGRPEG PGPGGEAERETVLVQGQQDGAVSKGERSLSSQEAKEAEDKIPPVTSKVSVIKGRIQKEALQLVKGEADAA TQGNKGLKGRVLQSSLTPEHKDPKATPP
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