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Report for CCDS24474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24474.1 Public Mus musculus 11 Cct4 23 108 98 CCDS HistoryNCBI Gene:12464Re-query CCDS DB by CCDS ID:24474.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24474.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173867.7 ENSMUSP00000133523.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173867.7Link to Ensembl Protein Viewer:ENSMUSP00000133523.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173867Re-query CCDS DB by Protein ID:ENSMUSP00000133523
Original member Current member NCBI NM_009837.1 NP_033967.1 Accepted alive Link to Nucleotide Sequence:NM_009837.1Link to Protein Sequence:NP_033967.1Re-query CCDS DB by Nucleotide ID:NM_009837Re-query CCDS DB by Protein ID:NP_033967Link to BLAST:NP_033967.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033967.1 539 P80315 539 100% 0 0

Chromosomal Locations for CCDS 24474.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 22990754 22990880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22993267 22993319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22994298 22994387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22995930 22996038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22996315 22996457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22997033 22997154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22997603 22997735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22999033 22999172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23000858 23000954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23001362 23001472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23001560 23001690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23002167 23002401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23002817 23002930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23003137 23003151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGCCGGAGAACGTAGCTTCCCGAAGCGGGGCGCCCACCGCCGGGCCCGGCAGCCGCGGGAAAAGCGCCT
ACCAGGACCGCGACAAGCCAGCCCAGATCCGCTTCAGCAATATTTCCGCGGCCAAAGCGGTTGCTGATGC
TATTAGAACAAGCCTTGGACCTAAAGGAATGGACAAAATGATTCAAGATGGAAAAGGCGATGTGACCATT
ACAAATGATGGTGCCACCATTCTGAAACAAATGCAGGTATTGCATCCAGCAGCCAGAATGCTGGTGGAAT
TGTCTAAAGCTCAAGACATAGAAGCAGGAGATGGCACCACGTCGGTTGTCATCATTGCTGGCTCTCTTTT
AGACTCCTGTACCAAACTTCTGCAGAAAGGTATACATCCAACCATCATTTCCGAGTCATTCCAGAAAGCT
TTGGAAAAGGGTCTTGAAATCCTTACTGACATGTCTCGACCTGTGCAACTGAGCGACAGAGAAACTTTGT
TAAATAGCGCAACTACTTCATTGAATTCAAAGGTTGTCTCTCAGTATTCAAGTCTACTCTCTCCAATGAG
TGTCAATGCGGTGATGAAAGTGATTGACCCAGCCACAGCTACCAGTGTAGATCTTCGAGATATTAAAATA
GTTAAGAAGCTTGGTGGGACAATAGATGACTGTGAGCTGGTGGAAGGCCTCGTTCTCACACAGAAAGTAG
CAAATTCTGGCATAACAAGAGTTGAAAAGGCTAAGATTGGGCTTATTCAGTTTTGCTTATCTGCTCCTAA
AACAGATATGGATAATCAAATAGTAGTATCTGACTATGCCCAGATGGATCGAGTGCTTCGAGAGGAGAGA
GCCTATATTTTAAATTTGGTGAAGCAAATTAAGAAAACAGGATGTAATGTCCTTCTCATACAGAAGTCTA
TCCTGAGAGATGCCCTTAGTGATCTTGCATTACATTTTCTGAATAAGATGAAGATTATGGTGGTTAAGGA
CGTTGAAAGAGAAGACATTGAATTCATCTGTAAGACAATTGGAACCAAACCAGTTGCTCACATTGACCAG
TTCACTGCTGACATGCTGGGTTCTGCTGAGTTAGCAGAGGAAGTCAGTTTAAATGGTTCTGGAAAACTAT
TCAAGATTACAGGTTGTACAAGCCCAGGGAAAACAGTTACAATTGTCGTACGTGGTTCTAACAAACTGGT
GATTGAAGAAGCTGAGCGCTCCATTCATGATGCTCTCTGTGTCATCCGATGCTTAGTAAAGAAAAGAGCT
CTTATTGCAGGAGGTGGTGCTCCAGAAATAGAGCTGGCCCTCAGACTGACAGAGTACTCCCGAACACTGA
GTGGTATGGAGTCCTACTGTGTTCGTGCTTTCGCGGATGCTATGGAAGTCATTCCATCTACACTAGCTGA
AAATGCTGGCCTGAATCCCATTTCTACAGTAACAGAGCTAAGAAACCGCCATGCCCAAGGAGAAAAAACT
ACAGGCATTAATGTCCGAAAGGGTGGGATCTCCAACATTTTGGAGGAAATGGTTGTTCAGCCTCTGTTGG
TGTCAGTCAGTGCTTTGACCTTAGCAACTGAAACTGTGCGGAGCATTCTGAAAATCGATGATGTGGTAAA
TACTCGATAA

Translation (539 aa):
MPENVASRSGAPTAGPGSRGKSAYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTI
TNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKA
LEKGLEILTDMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKI
VKKLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREER
AYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDVEREDIEFICKTIGTKPVAHIDQ
FTADMLGSAELAEEVSLNGSGKLFKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRA
LIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT
TGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVNTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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