NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS84719.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84719.1 Public Mus musculus 4 Phf24 23 108 98 CCDS HistoryNCBI Gene:230085Re-query CCDS DB by CCDS ID:84719.1Re-query CCDS DB by GeneID:230085See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84719.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107975.7 ENSMUSP00000103609.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107975.7Link to Ensembl Protein Viewer:ENSMUSP00000103609.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107975Re-query CCDS DB by Protein ID:ENSMUSP00000103609
Original member Current member NCBI NM_001346526.1 NP_001333455.1 Accepted alive Link to Nucleotide Sequence:NM_001346526.1Link to Protein Sequence:NP_001333455.1Re-query CCDS DB by Nucleotide ID:NM_001346526Re-query CCDS DB by Protein ID:NP_001333455Link to BLAST:NP_001333455.1
Original member Current member NCBI NM_001355693.1 NP_001342622.1 Accepted alive Link to Nucleotide Sequence:NM_001355693.1Link to Protein Sequence:NP_001342622.1Re-query CCDS DB by Nucleotide ID:NM_001355693Re-query CCDS DB by Protein ID:NP_001342622Link to BLAST:NP_001342622.1
Original member Current member NCBI NM_001355694.1 NP_001342623.1 Accepted alive Link to Nucleotide Sequence:NM_001355694.1Link to Protein Sequence:NP_001342623.1Re-query CCDS DB by Nucleotide ID:NM_001355694Re-query CCDS DB by Protein ID:NP_001342623Link to BLAST:NP_001342623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333455.1 400 Q80TL4-1 400 100% 0 0
NP_001342622.1 400 Q80TL4-1 400 100% 0 0
NP_001342623.1 400 Q80TL4-1 400 100% 0 0

Chromosomal Locations for CCDS 84719.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 42933620 42933997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42934633 42934818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42937841 42937919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42938173 42938378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42938615 42938775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42939086 42939181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42939505 42939601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGGGGGTGTTGATGTCCAAGCGGCAGACAGTAGAGCAGGTGCAGAAGGTGAGCCTGGCTGTGTCAGCCT
TCAAGGATGGGCTACGGGACAGGCCTTCCATTAGACGTGGGGGTGAGCTGCCAGGGTCCCGCCGTGGCAC
TGTGGAGGGCTCTGTTCAGGAAGTACAGGAGGAGAAGGAAGCAGAGGCGAGCGCCCCCGTGGTCCAGGAA
GAGAGCAGTATCAACCGCGCAGCCTGGGAGCGGCTCCGAGATGGGCGTGGCGTCGAGCCTGAGGAGTTTG
ACAGGACCAGCCGATTCACGCCTCCTGCCTTCATCCGGCCCACGCGGAAGCTGGACGATGACAAACCTCC
AGATATCTGCTTGGAACCCCGGGAGCCTGTTGTCAACGACGAGATGTGTGACGTCTGTGAAGTCTGGACC
GCTGAGAGCCTCTTCCCATGCAGAGTCTGCACCAGGGTTTTCCACGATGGTTGCCTGCGCCGCATGGGCT
ACCTCCAAGGGGACAGTGCAGTGGAGGTGACTGAGATGGCCCATACAGAGACAGGCTGGAGCTGTTACTA
CTGTGACAACCTTAACCTGCTGCTTACTGAGGAGGAGATGTATAGCCTTACTGAGACCTTTCAGCGGTGT
AAAGTCATCCCTGATTGCTCCCTGACACTGGAGGACTTTGTGCGCTACCGCCACCAAGCAGCAAAGCGAG
GGGAGAGCAGCAGGGCCCTGACTGACGAGCAAGAGGAGCAGGCAGCCCGCCAGTTTGCAGCCTTGGACCC
TGAACAACGGGGTCACGTAGAGTGGTCCGACTTCTTGTCCCACGAATCCCTTCTTCTGCTGCTGCAGCTG
CGTCCCCAGAACTCTCTCTTGAGGCTCCTTACTGTCAAGGAGAGGGAACGAGCCCGAGCCACCTTCCTGG
CACGGGGCAGAGGGAGCACCATCAGCGAGGCGGAGTGCCACCATGCCCGGCATTCTTGGTTCTGTAAACG
CCTTACAGAGGCTCCTTCCTGCAGTGTCAGCATCAGCCATGTTGGGCCTATAGCAGACAGCAGCCCAGCT
GCCAGCAGCAGCAAGAGTCAGGAGAAGGCCCTGCTGCCCACAGAGCAGGAGTCCAGATACGTGGATTGGC
CCACCTTCCTAAGAGAGAACGTCATCTACATCTTGGCTGCTCGTCCTAACAGCGGAGCGATCCACCTGAA
GCCCCCAGGATAG

Translation (400 aa):
MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSIRRGGELPGSRRGTVEGSVQEVQEEKEAEASAPVVQE
ESSINRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPPDICLEPREPVVNDEMCDVCEVWT
AESLFPCRVCTRVFHDGCLRRMGYLQGDSAVEVTEMAHTETGWSCYYCDNLNLLLTEEEMYSLTETFQRC
KVIPDCSLTLEDFVRYRHQAAKRGESSRALTDEQEEQAARQFAALDPEQRGHVEWSDFLSHESLLLLLQL
RPQNSLLRLLTVKERERARATFLARGRGSTISEAECHHARHSWFCKRLTEAPSCSVSISHVGPIADSSPA
ASSSKSQEKALLPTEQESRYVDWPTFLRENVIYILAARPNSGAIHLKPPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH