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Report for CCDS89550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89550.1 Public Mus musculus 2 Itpripl1 23 108 98 CCDS HistoryNCBI Gene:73338Re-query CCDS DB by CCDS ID:89550.1Re-query CCDS DB by GeneID:73338See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89550.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000132773.1 ENSMUSP00000118487.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000132773.1Link to Ensembl Protein Viewer:ENSMUSP00000118487.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000132773Re-query CCDS DB by Protein ID:ENSMUSP00000118487
Original member Current member NCBI NM_001355634.1 NP_001342563.1 Accepted alive Link to Nucleotide Sequence:NM_001355634.1Link to Protein Sequence:NP_001342563.1Re-query CCDS DB by Nucleotide ID:NM_001355634Re-query CCDS DB by Protein ID:NP_001342563Link to BLAST:NP_001342563.1

Chromosomal Locations for CCDS 89550.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127141462 127141726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127141974 127142200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGGCTGTGATAAGCCTCATGTTCTTGGCAGTGATGTATGTTGTTCACCACCCCCTGATGGTCAGTGACC
GCATGGACCTGGACACGCTAGCTAGGAGTCGGCAGCTGGAGAAGCGAATGAGCGAGGAGATGCGGCAGTT
AGAGATGGAGTTTGAAGAGAGGAGCCGAGCCGCTGAGCAGAAGCAGAAAGTGGAGAACTTCTGGAGAGGG
GATACATCCAGTGACCAGAAGCCCTGGAAGCCTTTTACAAACATTATATCCAAAATGCCATCCGTGACCT
GCCCTGCACCTGTGAGTTTGTGGAGAGCTTTGTGGATGATCTCATTGAGGCCTGCCGGGTGCTCAGCCGC
CGGGAGGCTCACCCACAGTTGGAGGACTGCCTGGGCTTTGGGGCTGCCTTTGAGAAGTGGGGAACCCTCC
ACGAGACCCAGAATTTCGATGTCCTGGTGCCCATTGTCCCTCCCCAGGGCACTATGTTTATCTTGGAGAT
GA

Translation (163 aa):
MAVISLMFLAVMYVVHHPLMVSDRMDLDTLARSRQLEKRMSEEMRQLEMEFEERSRAAEQKQKVENFWRG
DTSSDQKPWKPFTNIISKMPSVTCPAPVSLWRALWMISLRPAGCSAAGRLTHSWRTAWALGLPLRSGEPS
TRPRISMSWCPLSLPRALCLSWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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