CCDS Report for Consensus CDS

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Report for CCDS38878.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
38878.1	Public	Mus musculus	4	Grik3	23	108	98

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38878.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000030676.7	ENSMUSP00000030676.7	Accepted	alive
		NCBI	NM_001081097.3	NP_001074566.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001074566.1	919	B1AS29	919	100%	0	0

Chromosomal Locations for CCDS 38878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)

Genome Browser links:

Chromosome	Start	Stop
4	125490831	125490945
4	125623481	125623657
4	125632268	125632525
4	125639281	125639462
4	125641544	125641597
4	125649679	125649852
4	125650448	125650591
4	125656288	125656395
4	125659689	125659802
4	125670553	125670756
4	125685994	125686217
4	125691095	125691213
4	125693962	125694179
4	125704333	125704555
4	125704955	125705205
4	125707897	125708091

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2760 nt):
ATGACCGCTCCCTGGCGGCGCCTCCGGAGTCTGGTTTGGGAATACTGGGCCGGGTTCCTAGTGTGCGCCT TCTGGATCCCAGACTCGCGCGGGATGCCCCACGTCATCCGGATCGGAGGAATCTTTGAGTATGCGGATGG TCCCAACGCCCAGGTCATGAACGCTGAAGAGCACGCCTTTCGATTTTCTGCCAACATCATCAACAGAAAC AGGACTCTGCTGCCCAACACGACCCTGACTTACGACATTCAGAGGATTCACTTCCATGACAGTTTTGAGG CCACCAAGAAGGCCTGTGACCAGTTGGCACTGGGTGTTGTAGCCATCTTTGGGCCATCGCAGGGCTCCTG CACCAATGCTGTCCAGTCCATTTGCAACGCCTTGGAGGTTCCCCACATCCAACTGCGCTGGAAGCACCAC CCACTGGACAACAAGGACACCTTCTACGTGAACCTCTACCCTGACTATGCCTCTCTCAGCCACGCCATCC TCGACTTGGTCCAGTCCCTCAAGTGGCGATCAGCCACCGTGGTCTATGATGACAGTACAGGTCTCATCCG TCTGCAGGAACTCATCATGGCCCCTTCGAGGTACAACATTCGCCTGAAGATTCGCCAGCTCCCGATTGAC TCGGATGACTCCCGCCCCTTGCTCAAAGAGATGAAGCGGGGCAGGGAGTTCCGGATCATCTTCGACTGCA GCCACACCATGGCAGCCCAGATCCTCAAGCAGGCCATGGCCATGGGCATGATGACGGAATACTACCACTT CATCTTCACCACTCTGGATCTCTACGCACTAGACCTGGAGCCCTACCGCTACTCGGGAGTGAACCTGACT GGGTTCCGCATACTCAACGTGGACAATCCCCATGTCTCAGCCATTGTGGAGAAGTGGGCCATGGAGCGAC TGCAGGCAGCTCCCCGGGCAGAGTCAGGCCTGCTGGATGGTGTGATGATGACGGATGCTGCCCTGCTCTA TGACGCGGTCCACATTGTGTCTGTGTGCTACCAGCGAGCGCCACAGATGACCGTGAACTCCCTGCAGTGC CATCGGCACAAGGCCTGGCGCTTTGGTGGCCGCTTCATGAACTTCATCAAGGAGGCTCAATGGGAAGGAT TAACTGGACGGATTGTGTTCAACAAAACCAGTGGCTTGCGGACTGATTTTGATCTGGACATCATCAGCCT GAAGGAAGATGGCCTCGAGAAGGTTGGAGTATGGAGTCCAGCTGACGGTCTCAATATCACTGAGGTTGCC AAAGGCCGAGGTCCTAATGTCACTGACTCTCTGACCAATAGGTCACTCATCGTCACCACTGTGCTGGAGG AGCCTTTTGTCATGTTCCGCAAGTCTGATAGGACCCTTTATGGCAATGACCGGTTTGAGGGCTACTGCAT CGACTTGCTCAAGGAGCTGGCACACATCCTGGGCTTCTCCTACGAGATCCGGCTGGTGGAAGACGGCAAG TACGGGGCCCAGGATGACAAAGGCCAGTGGAACGGCATGGTCAAGGAACTCATTGACCACAAAGCAGATC TGGCTGTGGCTCCCCTGACCATCACCCATGTCCGAGAGAAGGCCATTGACTTCTCTAAACCTTTTATGAC CCTTGGAGTGAGCATCTTATACCGCAAGCCCAATGGCACCAACCCCAGTGTCTTCTCCTTCCTCAACCCC CTGTCCCCGGACATCTGGATGTACGTGCTCCTTGCCTACCTGGGTGTCAGCTGTGTCCTCTTCGTCATCG CCAGATTCAGCCCTTACGAGTGGTATGATGCTCATCCCTGCAACCCCGGCTCAGAGGTGGTGGAGAATAA CTTCACACTGCTCAACAGCTTCTGGTTTGGAATGGGCTCCCTGATGCAGCAAGGATCTGAACTGATGCCC AAAGCTCTGTCTACCCGCATCATTGGCGGCATCTGGTGGTTCTTCACCCTCATTATCATCTCCTCCTACA CGGCCAACCTGGCTGCCTTCCTGACTGTGGAGCGTATGGAGTCGCCCATCGACTCCGCTGATGACCTGGC CAAGCAGACCAAAATAGAGTACGGTGCTGTCAAGGACGGGGCCACCATGACCTTCTTCAAGAAATCCAAG ATCTCCACCTTTGAGAAGATGTGGGCCTTCATGAGCAGCAAGCCCTCGGCTCTGGTGAAGAACAACGAGG AGGGCATCCAGCGGACGCTCACAGCTGACTACGCCCTGCTCATGGAGTCCACTACCATAGAGTACATCAC ACAGAGGAACTGCAACCTCACCCAGATCGGTGGCCTCATCGACTCCAAGGGCTATGGCATCGGCACACCC ATGGGCTCCCCCTACCGGGACAAAATCACCATCGCCATTCTGCAGCTACAGGAGGAGGACAAACTGCACA TCATGAAGGAGAAGTGGTGGCGTGGCAGTGGGTGCCCCGAGGAGGAGAACAAGGAGGCCAGCGCCCTGGG CATCCAGAAGATCGGCGGCATCTTCATCGTCCTGGCCGCCGGCTTGGTCCTGTCCGTGTTGGTGGCAGTG GGCGAGTTCATATACAAACTCCGCAAGACAGCGGAGCGGGAGCAGCGCTCCTTCTGCAGCACAGTGGCCG ACGAGATCCGCTTCTCCCTCACCTGCCAACGGCGTCTCAAGCACAAGCCCCAGCCTCCTATGATGGTCAA GACGGATGCGGTTATCAACATGCACACCTTTAATGACCGAAGGCTGCCAGGCAAGGACAGCATGAGCTGC AGCACCTCGCTAGCCCCTGTCTTCCCCTAG
Translation (919 aa):
MTAPWRRLRSLVWEYWAGFLVCAFWIPDSRGMPHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRN RTLLPNTTLTYDIQRIHFHDSFEATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHH PLDNKDTFYVNLYPDYASLSHAILDLVQSLKWRSATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQLPID SDDSRPLLKEMKRGREFRIIFDCSHTMAAQILKQAMAMGMMTEYYHFIFTTLDLYALDLEPYRYSGVNLT GFRILNVDNPHVSAIVEKWAMERLQAAPRAESGLLDGVMMTDAALLYDAVHIVSVCYQRAPQMTVNSLQC HRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLNITEVA KGRGPNVTDSLTNRSLIVTTVLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGK YGAQDDKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKPNGTNPSVFSFLNP LSPDIWMYVLLAYLGVSCVLFVIARFSPYEWYDAHPCNPGSEVVENNFTLLNSFWFGMGSLMQQGSELMP KALSTRIIGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVKDGATMTFFKKSK ISTFEKMWAFMSSKPSALVKNNEEGIQRTLTADYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTP MGSPYRDKITIAILQLQEEDKLHIMKEKWWRGSGCPEEENKEASALGIQKIGGIFIVLAAGLVLSVLVAV GEFIYKLRKTAEREQRSFCSTVADEIRFSLTCQRRLKHKPQPPMMVKTDAVINMHTFNDRRLPGKDSMSC STSLAPVFP

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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