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Report for CCDS39017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39017.1 Public Mus musculus 5 Gnat3 23 108 98 CCDS HistoryNCBI Gene:242851Re-query CCDS DB by CCDS ID:39017.1Re-query CCDS DB by GeneID:242851See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39017.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030561.8 ENSMUSP00000030561.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030561.8Link to Ensembl Protein Viewer:ENSMUSP00000030561.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030561Re-query CCDS DB by Protein ID:ENSMUSP00000030561
Original member Current member NCBI NM_001081143.1 NP_001074612.1 Accepted alive Link to Nucleotide Sequence:NM_001081143.1Link to Protein Sequence:NP_001074612.1Re-query CCDS DB by Nucleotide ID:NM_001081143Re-query CCDS DB by Protein ID:NP_001074612Link to BLAST:NP_001074612.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074612.1 354 Q3V3I2 354 100% 0 0

Chromosomal Locations for CCDS 39017.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 17962679 17962796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17986437 17986479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17991319 17991460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17999654 17999811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 18003761 18003889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 18015232 18015361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 18015551 18015704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 18019478 18019668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGGAAGTGGAATTAGTTCAGAGAGCAAGGAATCAGCCAGAAGGTCCAAAGAACTGGAGAAGAAGCTTC
AGGAGGATGCTGAGCGGGATGCAAGAACTGTGAAGTTACTGCTACTAGGAGCAGGTGAATCTGGGAAAAG
CACTATTGTTAAACAAATGAAGATCATCCATAAGAATGGTTACAGCAAACAAGAATGCATGGAGTTTAAA
GCAGTGATTTACAGTAACACATTGCAGTCCATCCTAGCTATTGTGAAAGCCATGGCTACACTGGGGATTG
ATTATGTCAATCCTAGGAGCCGAGAGGACCAAGAACAACTTCACTCAATGGCAAATACACTAGAAGATGG
TGATATGACTCCACAGCTGGCTGAAATCATTAAACGACTGTGGGGGGATCCAGGAATCCAAGCCTGCTTT
GAAAGGGCATCTGAATACCAGCTCAATGACTCTGCAGCTTACTACCTTAATGACTTAGACAGACTCACAG
CCCCTGGGTACGTGCCAAATGAGCAAGATGTTCTACATTCCCGGGTGAAAACCACTGGTATCATTGAAAC
TCAATTCTCCTTTAAAGACTTGAACTTCAGAATGTTTGATGTAGGTGGCCAGAGATCAGAGAGAAAAAAA
TGGATCCACTGCTTTGAAGGAGTCACCTGCATTATATTTTGCGCAGCGCTAAGTGCCTATGACATGGTGC
TTGTAGAAGATGAGGAGGTGAACAGAATGCATGAAAGTCTTCACCTGTTTAACAGCATATGTAATCATAA
GTACTTCGCAACCACCTCCATTGTTCTGTTTCTTAACAAGAAAGATCTCTTCCAGGAGAAAGTGGCTAAG
GTGCACCTCAGCATTTGCTTTCCAGAATATACTGGACCAAACACATTTGAAGATGCAGGGAACTACATCA
AGAACCAGTTTCTAGACCTGAACTTAAAAAAAGAAGATAAGGAAATCTATTCTCACATGACCTGTGCTAC
TGACACACAAAATGTCAAATTTGTGTTTGATGCAGTGACAGATATAATAATAAAAGAGAACCTCAAAGAC
TGTGGGCTCTTCTGA

Translation (354 aa):
MGSGISSESKESARRSKELEKKLQEDAERDARTVKLLLLGAGESGKSTIVKQMKIIHKNGYSKQECMEFK
AVIYSNTLQSILAIVKAMATLGIDYVNPRSREDQEQLHSMANTLEDGDMTPQLAEIIKRLWGDPGIQACF
ERASEYQLNDSAAYYLNDLDRLTAPGYVPNEQDVLHSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKK
WIHCFEGVTCIIFCAALSAYDMVLVEDEEVNRMHESLHLFNSICNHKYFATTSIVLFLNKKDLFQEKVAK
VHLSICFPEYTGPNTFEDAGNYIKNQFLDLNLKKEDKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKD
CGLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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