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Report for CCDS36731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36731.1 Public Mus musculus 13 Slc9a3 23 108 98 CCDS HistoryNCBI Gene:105243Re-query CCDS DB by CCDS ID:36731.1Re-query CCDS DB by GeneID:105243See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36731.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036208.6 ENSMUSP00000038142.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036208.6Link to Ensembl Protein Viewer:ENSMUSP00000038142.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036208Re-query CCDS DB by Protein ID:ENSMUSP00000038142
Original member NCBI NM_001081060.2 NP_001074529.1 Updated not alive Link to Nucleotide Sequence:NM_001081060.2Link to Protein Sequence:NP_001074529.1Re-query CCDS DB by Nucleotide ID:NM_001081060Re-query CCDS DB by Protein ID:NP_001074529
Current member NCBI NM_001081060.3 NP_001074529.1 Accepted alive Link to Nucleotide Sequence:NM_001081060.3Link to Protein Sequence:NP_001074529.1Re-query CCDS DB by Nucleotide ID:NM_001081060Re-query CCDS DB by Protein ID:NP_001074529Link to BLAST:NP_001074529.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074529.1 829 G3X939 829 100% 0 0

Chromosomal Locations for CCDS 36731.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 74121515 74121710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74150660 74150962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74155089 74155249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74156985 74157063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74157605 74157782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74158675 74158895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74159229 74159431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74160221 74160310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74160427 74160497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74161697 74161826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74163020 74163135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74163683 74163812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74164164 74164340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74164524 74164596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74165298 74165405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74165811 74166064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2490 nt):
ATGTGGCACCGGGCTCTGGGACCAGGGTGGAAGCTGCTGCTGGCCCTGGCGCTGACCAGCCTGCAAGGCG
CGAGGGGGGCTGAGGAGGAACCGAGCAGTGATGGGAGCTTCCAGGTGGTCACCTTCAAATGGCACCACGT
CCAGGATCCATACATCATTGCGCTCTGGATCCTCGTGGCCAGCTTGGCCAAAATCGTCTTTCACCTGTCC
CACAAGGTCACCAGTATCGTCCCCGAGAGTGCTCTACTCATCGTTCTGGGCCTGGTGTTGGGTGGCATCG
TCTGGGCAGCTGACCACATCGCCTCCTTCACACTCACACCCACGCTCTTCTTCTTCTACCTGCTGCCCCC
TATTGTGTTGGATGCTGGATACTTCATGCCCAATCGACTCTTCTTTGGCAACCTGGGCACCATTCTGCTA
TATGCTGTCATTGGCACTATATGGAATGCAGCCACCACAGGATTGTCCCTCTATGGTGTCTTCCTCAGTG
GCTTGATGGGTGAACTGAAAATTGGACTCCTGGATTTCTTGCTGTTTGGTAGCCTCATTGCAGCTGTGGA
CCCAGTGGCTGTGCTGGCTGTGTTTGAGGAAGTCCATGTCAATGAAGTCCTCTTCATCATTGTCTTTGGG
GAGTCACTGCTGAATGATGCAGTGACTGTGGTCTTGTACAATGTTTTTGAGTCTTTTGTGACACTGGGTG
GTGACGCAGTGACTGGCGTGGATTGTGTGAAAGGCATAGTGTCCTTCTTCGTGGTGAGCCTGGGGGGCAC
TCTGGTGGGTGTTATCTTCGCCTTCCTGCTGTCCTTGGTGACTCGCTTCACCAAGCATGTGCGTATCATC
GAGCCTGGCTTCGTCTTTGTCATTTCCTACCTGTCCTATCTGACCTCCGAGATGCTGTCTTTGTCATCCA
TCCTGGCCATCACCTTTTGCGGCATCTGCTGTCAGAAGTACGTGAAGGCCAACATCTCAGAGCAGTCGGC
CACCACTGTGCGCTACACTATGAAGATGCTGGCCAGTGGAGCAGAGACCATTATCTTTATGTTCCTGGGT
ATCTCAGCTGTGAACCCCGACATCTGGACATGGAACACAGCTTTTGTGTTGCTGACACTGGTCTTCATTT
CTGTATATCGAGCCATTGGTGTTGTTCTGCAGACCTGGATCCTGAATCGCTACAGAATGGTGCAGCTAGA
AACCATTGACCAGGTGGTCATGTCCTATGGTGGCCTGCGTGGGGCAGTGGCCTATGCCTTGGTGGTACTT
CTGGATGAGAAGAAAGTCAAGGAGAAAAATCTGTTTGTCAGCACCACTCTCATTGTGGTTTTCTTCACAG
TCATCTTTCAGGGCCTGACCATTAAGCCCCTGGTGCAGTGGCTGAAGGTGAAGAGGAGCGAGCATCGTGA
GCCAAAGCTCAATGAGAAGCTACATGGCCGGGCTTTCGACCACATCCTCTCAGCCATTGAGGACATCTCA
GGACAAATTGGACACAATTACCTCAGAGATAAGTGGTCCAATTTTGACCGGAAGTTCCTCAGCAAAGTCC
TCATGAGAAGATCTGCTCAAAAATCTCGAGATCGGATCCTGAATGTTTTCCATGAGCTGAATTTGAAGGA
TGCTATCAGCTATGTGGCTGAGGGAGAGCGCCGTGGGTCCCTGGCCTTCATTCGCTCCCCAAGTACGGAC
AATATGGTCAATGTGGACTTCAACACACCCCGCCCATCTACTGTGGAGGCGTCTGTCTCATATTTCTTGA
GGGAAAATGTCAGTGCTGTATGCCTGGACATGCAGTCCTTGGAACAGAGGCGGAGGAGCATCCGTGACAC
CGAGGACATGGTCACCCACCACACACTGCAACAGTACCTGTACAAGCCTCGGCAGGAGTACAAGCATCTC
TATAGTCGGCACGAGCTAACACCCAATGAGGATGAAAAGCAGGACAAGGAAATCTTTCACAGAACCATGA
GGAAGCGCCTGGAGTCCTTTAAGTCAGCTAAGCTAGGCATCAACCAGAATAAGAAGGCGGCCAAGCTGTA
CAAGAGGGAGCGCGCACAGAAGCGGAGGAATAGCAGCATTCCTAATGGGAAACTGCCTATGGAGAACCTG
GCACACAACTACACCATCAAGGAGAAAGATTTGGAACTTTCAGAGCATGAGGAGGCCACCAACTATGAAG
AGATCAGTGGAGGCATTGAGTTTCTGGCCAGTGTCACCCAGGATGTAGCCTCTGACTCTGGGGCAGGAAT
TGATAATCCCGTGTTCTCCCCTGATGAGGATCTGGACCCAAGCATCCTATCCAGGGTGCCACCCTGGCTG
TCCCCTGGGGAGACCGTGGTGCCCTCCCAGAGGGCCCGTGTTCAGATTCCAAACTCTCCCAGCAACTTCC
GCCGCCTGACACCATTCCGCCTCAGCAACAAATCCGTGGATTCCTTCCTGCAGGCTGATGGCCACGAGGA
ACAGCTCCAACCGGCTGCCCCCGAGTCCACACACATGTAA

Translation (829 aa):
MWHRALGPGWKLLLALALTSLQGARGAEEEPSSDGSFQVVTFKWHHVQDPYIIALWILVASLAKIVFHLS
HKVTSIVPESALLIVLGLVLGGIVWAADHIASFTLTPTLFFFYLLPPIVLDAGYFMPNRLFFGNLGTILL
YAVIGTIWNAATTGLSLYGVFLSGLMGELKIGLLDFLLFGSLIAAVDPVAVLAVFEEVHVNEVLFIIVFG
ESLLNDAVTVVLYNVFESFVTLGGDAVTGVDCVKGIVSFFVVSLGGTLVGVIFAFLLSLVTRFTKHVRII
EPGFVFVISYLSYLTSEMLSLSSILAITFCGICCQKYVKANISEQSATTVRYTMKMLASGAETIIFMFLG
ISAVNPDIWTWNTAFVLLTLVFISVYRAIGVVLQTWILNRYRMVQLETIDQVVMSYGGLRGAVAYALVVL
LDEKKVKEKNLFVSTTLIVVFFTVIFQGLTIKPLVQWLKVKRSEHREPKLNEKLHGRAFDHILSAIEDIS
GQIGHNYLRDKWSNFDRKFLSKVLMRRSAQKSRDRILNVFHELNLKDAISYVAEGERRGSLAFIRSPSTD
NMVNVDFNTPRPSTVEASVSYFLRENVSAVCLDMQSLEQRRRSIRDTEDMVTHHTLQQYLYKPRQEYKHL
YSRHELTPNEDEKQDKEIFHRTMRKRLESFKSAKLGINQNKKAAKLYKRERAQKRRNSSIPNGKLPMENL
AHNYTIKEKDLELSEHEEATNYEEISGGIEFLASVTQDVASDSGAGIDNPVFSPDEDLDPSILSRVPPWL
SPGETVVPSQRARVQIPNSPSNFRRLTPFRLSNKSVDSFLQADGHEEQLQPAAPESTHM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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