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Report for CCDS42145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42145.1 Public Homo sapiens 16 TMEM219 24 110 108 CCDS HistoryNCBI Gene:124446Re-query CCDS DB by CCDS ID:42145.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42145.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000279396.11 ENSP00000279396.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000279396.11Link to Ensembl Protein Viewer:ENSP00000279396.6Re-query CCDS DB by Nucleotide ID:ENST00000279396Re-query CCDS DB by Protein ID:ENSP00000279396
Original member Current member EBI ENST00000414689.6 ENSP00000388485.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414689.6Link to Ensembl Protein Viewer:ENSP00000388485.2Re-query CCDS DB by Nucleotide ID:ENST00000414689Re-query CCDS DB by Protein ID:ENSP00000388485
Original member Current member EBI ENST00000561899.6 ENSP00000456960.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000561899.6Link to Ensembl Protein Viewer:ENSP00000456960.1Re-query CCDS DB by Nucleotide ID:ENST00000561899Re-query CCDS DB by Protein ID:ENSP00000456960
Original member Current member EBI ENST00000566848.5 ENSP00000457492.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000566848.5Link to Ensembl Protein Viewer:ENSP00000457492.1Re-query CCDS DB by Nucleotide ID:ENST00000566848Re-query CCDS DB by Protein ID:ENSP00000457492
Original member Current member EBI ENST00000570255.6 ENSP00000459813.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000570255.6Link to Ensembl Protein Viewer:ENSP00000459813.2Re-query CCDS DB by Nucleotide ID:ENST00000570255Re-query CCDS DB by Protein ID:ENSP00000459813
Original member Current member NCBI NM_001083613.2 NP_001077082.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001083613.2Link to Protein Sequence:NP_001077082.1Re-query CCDS DB by Nucleotide ID:NM_001083613Re-query CCDS DB by Protein ID:NP_001077082Link to BLAST:NP_001077082.1
Original member Current member NCBI NM_001369688.1 NP_001356617.1 Accepted alive Link to Nucleotide Sequence:NM_001369688.1Link to Protein Sequence:NP_001356617.1Re-query CCDS DB by Nucleotide ID:NM_001369688Re-query CCDS DB by Protein ID:NP_001356617Link to BLAST:NP_001356617.1
Original member Current member NCBI NM_194280.4 NP_919256.1 Accepted alive Link to Nucleotide Sequence:NM_194280.4Link to Protein Sequence:NP_919256.1Re-query CCDS DB by Nucleotide ID:NM_194280Re-query CCDS DB by Protein ID:NP_919256Link to BLAST:NP_919256.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077082.1 240 Q86XT9 240 100% 0 0
NP_001356617.1 240 Q86XT9 240 100% 0 0
NP_919256.1 240 Q86XT9 240 100% 0 0

Chromosomal Locations for CCDS 42145.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 29963144 29963308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29963400 29963589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29968025 29968254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29971408 29971545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGGGCAACTGCCAGGCAGGGCACAACCTGCACCTGTGTCTGGCCCACCACCCACCTCTGGTCTGTGCCA
CTTTGATCCTGCTGCTCCTTGGCCTCTCTGGCCTGGGCCTTGGCAGCTTCCTCCTCACCCACAGGACTGG
CCTGCGCAGCCCTGACATCCCCCAGGACTGGGTCTCTTTTTTGAGATCTTTTGGCCAGCTGACCCTGTGT
CCCAGGAATGGGACAGTCACAGGGAAGTGGCGAGGGTCTCACGTCGTGGGCTTGCTGACCACCTTGAACT
TCGGAGACGGTCCAGACAGGAACAAGACCCGGACATTCCAGGCCACAGTCCTGGGAAGTCAGATGGGATT
GAAAGGATCTTCTGCAGGACAACTGGTCCTTATCACAGCCAGGGTGACCACAGAAAGGACTGCAGGAACC
TGCCTATATTTTAGTGCTGTTCCAGGAATCCTACCCTCCAGCCAGCCACCCATATCCTGCTCAGAGGAGG
GGGCTGGAAATGCCACCCTGAGCCCTAGAATGGGTGAGGAATGTGTTAGTGTCTGGAGCCATGAAGGCCT
TGTGCTGACCAAGCTGCTCACCTCGGAGGAGCTGGCTCTGTGTGGCTCCAGGCTGCTGGTCTTGGGCTCC
TTCCTGCTTCTCTTCTGTGGCCTTCTCTGCTGTGTCACTGCTATGTGCTTCCACCCGCGCCGGGAGTCCC
ACTGGTCTAGAACCCGGCTCTGA

Translation (240 aa):
MGNCQAGHNLHLCLAHHPPLVCATLILLLLGLSGLGLGSFLLTHRTGLRSPDIPQDWVSFLRSFGQLTLC
PRNGTVTGKWRGSHVVGLLTTLNFGDGPDRNKTRTFQATVLGSQMGLKGSSAGQLVLITARVTTERTAGT
CLYFSAVPGILPSSQPPISCSEEGAGNATLSPRMGEECVSVWSHEGLVLTKLLTSEELALCGSRLLVLGS
FLLLFCGLLCCVTAMCFHPRRESHWSRTRL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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