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Report for CCDS25658.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25658.2 Public Mus musculus 11 Mrpl38 23 108 98 CCDS HistoryNCBI Gene:60441Re-query CCDS DB by CCDS ID:25658.2Re-query CCDS DB by GeneID:60441See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 25658.2
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25658.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106439.1 ENSMUSP00000102047.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106439.1Link to Ensembl Protein Viewer:ENSMUSP00000102047.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106439Re-query CCDS DB by Protein ID:ENSMUSP00000102047
Original member Current member NCBI NM_024177.3 NP_077139.2 Accepted alive Link to Nucleotide Sequence:NM_024177.3Link to Protein Sequence:NP_077139.2Re-query CCDS DB by Nucleotide ID:NM_024177Re-query CCDS DB by Protein ID:NP_077139Link to BLAST:NP_077139.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077139.2 380 Q8K2M0-1 380 100% 0 0

Chromosomal Locations for CCDS 25658.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116131994 116132130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116132420 116132556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116132743 116132901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116134256 116134301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116134433 116134505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116134908 116135116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116135191 116135325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116138442 116138621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116138711 116138777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGCGGCGCCCTGGTGGCGTGCGGCGTTTTTCGGAATTGGGAGATGCCGGGGCTTCAGCACCTCGGCCT
TCCTCAGCCGCCGGACACCCCCGCTCGGGCCCATGCCCAACGAGGACATCGACGTGAGCAACCTGGAGCG
GCTGGAGAAGTACCGGAGCTTCGAGCGGTACCGCCGCCGGGCGGAGCAGGAGGCGCGCGCCCCGCACTGG
TGGCGGACCTACCGGGAGCATTTCGTGAAGGAGACAGATCCCAAAGACAAAATTGACATTGGGCTACCCC
CACCCAGAGTCAGTCGGACCCAAAAGCTACTGGAGCGGAAGCACTTTCTGCGGGAACTTCGTGCCAATGT
GGAAGAAGAACGGGCAGCCCGCCTCCGCACGGCTAGCATCCCACTGGAGGCAGTGCGGGCAGAGTGGGAG
AGGACGTGTGGGCCCTACCACAAGCAGCGTCTGGCTGAGTACTATGGCCTCTACCGAGACCTGTTCCACG
GTGCCACTTTTGTGCCCTGGGTCCCTCTACACGTGGCTTACGCCGTGGGAGAAGAGGACCTGATCCCGGT
GTATCATGGCAATGAAGTGACTCCGACCGAGGCTTCCCGGGCCCCAGAGGTGACCTATGAGGCAGACAAG
GATTCCTTGTGGACACTGCTATTCATCAACTTGGACGGACACCTGCTGGAGCCGGACGCTGAGTATGTTC
ACTGGCTGCTAACCAACATCCCAAGCAACAGAGTGGCTGAAGGACAGGAGACATGTCCCTACCTCCCTCC
TTTCCCTGCTCGAGGCTCTGGCTTCCACCGCTTTGCCTTCTTGCTCTTCAAGCAGGACAAGCCAATCAAC
TTCTCAGAGGACACCCGTCCCTCACCCTGCTACCAGCTGGCCCAGAGGACCTTCCGCACTTTTGATTTCT
ACAAGAGACACCAGGAAGCCATGACTCCAGCCGGTCTGGCTTTTTTCCAGTGCCGCTGGGATGACTCTGT
CACCCACACCTTCCACCAGCTTCTAGACATGCGGGAACCTGTGTTTGAATTTGTACGGCCACCCCCTTAC
CACCCCAAACAGAAGCGCTTCCCCCACGAGCAGCCCCTACGCTATCTGGACCGATACAGGGACAGTCATG
AGCCCACCTATGGAATCTACTGA

Translation (380 aa):
MAAPWWRAAFFGIGRCRGFSTSAFLSRRTPPLGPMPNEDIDVSNLERLEKYRSFERYRRRAEQEARAPHW
WRTYREHFVKETDPKDKIDIGLPPPRVSRTQKLLERKHFLRELRANVEEERAARLRTASIPLEAVRAEWE
RTCGPYHKQRLAEYYGLYRDLFHGATFVPWVPLHVAYAVGEEDLIPVYHGNEVTPTEASRAPEVTYEADK
DSLWTLLFINLDGHLLEPDAEYVHWLLTNIPSNRVAEGQETCPYLPPFPARGSGFHRFAFLLFKQDKPIN
FSEDTRPSPCYQLAQRTFRTFDFYKRHQEAMTPAGLAFFQCRWDDSVTHTFHQLLDMREPVFEFVRPPPY
HPKQKRFPHEQPLRYLDRYRDSHEPTYGIY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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