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Report for CCDS38190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38190.1 Public Mus musculus 2 D430041D05Rik 23 108 98 CCDS HistoryNCBI Gene:241589Re-query CCDS DB by CCDS ID:38190.1Re-query CCDS DB by GeneID:241589See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38190.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089726.9 ENSMUSP00000106756.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089726.9Link to Ensembl Protein Viewer:ENSMUSP00000106756.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000089726Re-query CCDS DB by Protein ID:ENSMUSP00000106756
Original member Current member NCBI NM_001033347.2 NP_001028519.2 Accepted alive Link to Nucleotide Sequence:NM_001033347.2Link to Protein Sequence:NP_001028519.2Re-query CCDS DB by Nucleotide ID:NM_001033347Re-query CCDS DB by Protein ID:NP_001028519Link to BLAST:NP_001028519.2

Chromosomal Locations for CCDS 38190.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 104148781 104149062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104152932 104153083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104154910 104155058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104156783 104156880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104167838 104168188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104192435 104192564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104201112 104201326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104205059 104205240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104208082 104208206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104214091 104214275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104221135 104221298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104230284 104230455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104233414 104233565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104238650 104238709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104241074 104241236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104248253 104248386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104249154 104249373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104252592 104252707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104254956 104255570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104258164 104258508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104409929 104410163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4245 nt):
ATGGCTCTGCAGGAGGCGAAGCCCCAGGGCCCGAGCGAAGCTGAGCCGGCAGCGCGGGAGCCCAGGGACC
GGCTCCGGGAGCAAGGGCTCTGCGGGGCGGGCGGGATCGCCGCGCGTTGCCAGGGCGTGAGAAGCTCCGA
GGCCCGCCGGTCCGAGGATGTGCTGCTGCGGCGGCCGCTGCTGCTGGGACTCTTGCTGCTGGCTGCCCTC
TCCGGGCACTGCTGGGCCGACTCCGGGACAGACAATCTACAGATACATGTCACTCCGACCTCAGAGTCCT
TTCCCCTTGGGAAATTGTTACCAATTTCACCAACATGGCCTTTCTTGGAAGTCAAGTCTTCCTCAGCAGC
AGACAGATTCAAGAATGTGCTGGGACAGCCTCCTGACAACACAACCTTGCTGAAGCTATCCCAGACACCT
CTGCCTAAGGCACACCGTAGGACCAGGGCACATGTGGACTTCTCTTCATCCCCTTACCAAGGAAGTGGAC
ATAGCGCCTCCCTGGATCTTGCCAAGGACCCCACTGAGACTCTGGTCCAAACAAGGCCTGAAGGGGGAAG
AGAAGCAGCGGACATGTCAGTGGAAACCTCTGTGTCCTCCAAAGGAGAACTGTCAGCAACTGCAGCAGCC
ACCGCCACCACCACATTGTTTCTGAGAAGATCAAGTCCAGCGCCACTGTCTGCAGCACTCACTGCTAAGG
GCACTGGCAGCAGCAGCAGCAACTTAGCCAAGAGCAGTCTGACCACTGCTCTAGCTAAAAACGTCACCAA
CAAGGCAGCATCAGGCCCAAAGGTGACAGCAGGGACCATCCACACAGCCTTCCCATTCACACCAACCTAC
ATGCTTGCCCGGACAGCACACAGCCTGAGCACACACACAGCCATGCAAGGGGCAACAGGCTCTGTGTCCG
GCCTGTTGTCCACAACACACCTCCCCAAGAAGCCACAAGCCATGCACACTGGTCTCCCTAATCCTACCAG
GCCAGACACACCCAGAGCATCCACGCCCCGTCCACTGACAATCACAGCTGCGCTGACGTCCATGACGGCA
TCAGTAAAGGCCACGAGGCTGCCATCTTTACAGACAGGAAACACAGATGCTGCTTTTCCGGCTGTGTCTA
CTGCAATGGCCACAACTGGCAGAATGGCATCCAACTTGGACTGTCAGATGTCCCACAAGTTCCTAGTGAA
GACAGTTTTCTTCCTAACTCAGAGGAGAATACAGAGCAGCGAGTCCTTGAAGCTTGGGGTAACCAAAGGG
CTCACACAGGCATTGCGGAAGGCTTTCCACCAGAACGACGTCTCCGCTCACGTGGACATTCTGGAATATT
CTCATAATGTCACAGTTGGCTATTATGCTACCAAAGGGAGGCTGGTGTATTTGCCTGCTGTGGTGATGGA
CGTGCTGGGCGTGTATGGAGTCAGCAATGTCACTGCCGACCTGAAGCAGCACACTCCCAACTTACAGTCT
GTGGCGGTGCTTGCCTCCCCGTGGAAGCCCCAGCCTGCAGGTGCCTTCCAGCTGAAGACAGTGCTGCAGT
TTGTAAGCCAGTCGGACAACATCCAGTCCTGCAGGTTTGCCCAGACAATGGAGCAGAGGCTGCAGAAGGC
ATTCCAGGATGCAGAGAGGAAGGTCCTCAGCACCAGGAGCAACCTAACAGTTCAGATCGTGAGCACGTCC
AATGCCTCCCAAGCTGTCACACTGGTGTATGCTGTGGGCAATCAGAGCTCGTTCCTCAACGGCACCGTGG
CCAGCAGCCTCCTTAGCCAGCTCTCAGCTGAGCTGGTAGGATTCTACCTCACCTACCCTCCACTCACCAT
TGCTGAACCACTGGAATATCCCAACCTCGACACATCAGAAACAACCAGAGACTACTGGGTCATCACAGTG
CTCCAGGGTGTGGACAACTCACTGGTGGGCCTGCACAACCAGAGCTTTGCCCGGGTCATGGAGCAGCGCC
TGGCTCAGCTGTTCATGATGTCCCAGCAACAAGGCCGACGGTTTAAACGTGCTACCACCTTGGGAAGCTA
CACTGTGCAGATGGTAAAGATGCAGCGAGTGCCAGGACCAAAGGACCCGGCAGAGCTGACGTACTACACA
CTGTACAACGGGAAGCCACTGCTGGGGACTGCAGCAGCCAAGATCCTAAGCACCATCGACTCCCAGAGGA
TGGCCCTGACCCTGCATCACGTTGTCCTTCTACAAGCTGACCCCGTGGTAAAGAATCCACCCAACAACCT
GTGGATCATCGCTGCGGTGCTGGCTCCCATCGCCGTGGTCACCATCATCATCATCATCATCACTGCTGTG
CTTTGTAGGAAGAACAAGAACGACTTCAAGCCGGACACCATGATAAACCTGCCGCAGAGAGCGAAGCCCG
TGCAAGGCTTTGACTACGCCAAGCAGCATCTCGGCCAGCAAGGGGCAGATGAGGAGGTCATCCCTGTGAC
CCAGGAAACGGTGGTCCTCCCCATACCTGTCAGAGATACTCCTCAGGAAAGAGACACGGCTCAAGATGGC
AGCGCCATCAAGACGGCTAAGTCCACTGAAACCAGAAGGAGGTCGCCCAGTGAGAATGGCTCTGTCATCA
GCAACGAATCAGGAAAGCCCAGCTCAGGGAGGCGCTCACCCCAGAATGGAATGACACAGCAGAAAGTGAC
AAAGGAGGAGTCCAGAAAGAGAAACGTGACAGCGAGCGATGAAGAGGAGGGAGCAGGTCTCTTTGACAGC
GCTGGCAAGGCGGCAGCAGATCCCTTTGACACCTCTTCTGGATCTGTGCAGCTCATCGCTATCAAACCAT
CAGCTCTGCCCGTAGTGCACCCTGCCTCCGACAGGGGACAGGAGTCCTCAGCAGCGCTCAATGGCGAGGT
GAACAAGGCTCTGAAGCAGAAATCAGACATTGAGCACTACCGGAACAAGCTGCGCCTGAAAGCCAAGAGG
AAGGGGTATTATGACTTTCCCCCAGTGGAGGCAGGCAAAGGCCTGGCGGAAAGGAAGATGTATGAGAAAG
CCCCCAAGGAAGTGGAGCATGTTTTGGACGCAGACCCAGAACTGTGTGCTCCCTTTGCGGAGTCTAAAAA
CAGGCAACAGATGAAGAACTCTGTCTACCGAAGCCGGCAGTCTCTGAATAGTCCGAGTCCGGGAGAAACT
GAGATGGACCTTCTGGTCACGCGCGAGCGACCCCGACGTGGAATCCGGAACAGCGGATATGATACTGAGC
CCGAGATCATAGAAGAGACCAACGTGGACAGAGTCCACGAGCCCCGGGGCTACGGCAGGGCGCGGCAGGC
GAAGGGCCACTCCGAGACCTCCACACTGAGCTCGCAGCCTTCCATCGACGAAGTCCGACAGCAGATGCAC
ATGCTTTTAGAGGAAGCCTTTAGCCTGGCATCTGCTGGCCATGCAGGCCAGAGCCGGCACCAGGAGACCT
ACGGCTCCACCCAGCACCTGCCGTACTCAGAGGTGGTGACCAGTGCTCCGGGGACCATGACACGGCCCAG
GGCTGGGGTGCAGTGGGTGCCCACCTACCGACCGGAAATGTACCAGTACAGTCTGCCCCGGCCGGCCTAC
AGGTTCTCCCAGCTTCCTGAGATGGTCATGGGCTCTCCCCCGCCCCCAGTTCCACCTCGAACAGGCCCTG
TGGCCGTGGCTTCCCTCAGGAGGTCCACCTCAGACATTGGCAGCAAGACCCGGATGGCGGAGTCCACGGG
ACCTGAGCCCACCCAGTTGCATGACAGTGCCTCATTTGCCCAGGTGTCCAGAGGTCCCGTGTCCGTGACG
CAGTTGGATCAGTCGGCTTTAAATTACTCAGGTAACACGGTGCCAGCGGTGTTTGCCATCCCAGCTGCCA
ACAGACCCGGCTTCACCGGCTACTTCATCCCAACACCACCCTCATCCTACAGGAGCCAGGCTTGGATGTC
CTATGCAGGAGAGAATGAGCTCCCGAGCCAGTGGGCTGATTCGGTCCCTCTTCCTGGGTACATCGAGGCC
TACCCCAGGTCACGTTATCAACAGAGCTCCCCCTCCAGGCTCCCTCGCCAGTATAGCCAGCCAGCCAACC
TTCATCCCAGCCTAGAGCAGGCCCCTGTCCCCTCTGCAGCTGCCTCACAGCAAAGCCTGACCGAAAATGA
GCCTCCGGACACTCCGTTGACCAACATCTCCACTGCAGCCCTCGTGAAGGCTATCCGAGAGGAAGTAGCC
AAGTTGGCCAAGAAGCAGACAGACATGTTTGAGTTCCAGGTCTAA

Translation (1414 aa):
MALQEAKPQGPSEAEPAAREPRDRLREQGLCGAGGIAARCQGVRSSEARRSEDVLLRRPLLLGLLLLAAL
SGHCWADSGTDNLQIHVTPTSESFPLGKLLPISPTWPFLEVKSSSAADRFKNVLGQPPDNTTLLKLSQTP
LPKAHRRTRAHVDFSSSPYQGSGHSASLDLAKDPTETLVQTRPEGGREAADMSVETSVSSKGELSATAAA
TATTTLFLRRSSPAPLSAALTAKGTGSSSSNLAKSSLTTALAKNVTNKAASGPKVTAGTIHTAFPFTPTY
MLARTAHSLSTHTAMQGATGSVSGLLSTTHLPKKPQAMHTGLPNPTRPDTPRASTPRPLTITAALTSMTA
SVKATRLPSLQTGNTDAAFPAVSTAMATTGRMASNLDCQMSHKFLVKTVFFLTQRRIQSSESLKLGVTKG
LTQALRKAFHQNDVSAHVDILEYSHNVTVGYYATKGRLVYLPAVVMDVLGVYGVSNVTADLKQHTPNLQS
VAVLASPWKPQPAGAFQLKTVLQFVSQSDNIQSCRFAQTMEQRLQKAFQDAERKVLSTRSNLTVQIVSTS
NASQAVTLVYAVGNQSSFLNGTVASSLLSQLSAELVGFYLTYPPLTIAEPLEYPNLDTSETTRDYWVITV
LQGVDNSLVGLHNQSFARVMEQRLAQLFMMSQQQGRRFKRATTLGSYTVQMVKMQRVPGPKDPAELTYYT
LYNGKPLLGTAAAKILSTIDSQRMALTLHHVVLLQADPVVKNPPNNLWIIAAVLAPIAVVTIIIIIITAV
LCRKNKNDFKPDTMINLPQRAKPVQGFDYAKQHLGQQGADEEVIPVTQETVVLPIPVRDTPQERDTAQDG
SAIKTAKSTETRRRSPSENGSVISNESGKPSSGRRSPQNGMTQQKVTKEESRKRNVTASDEEEGAGLFDS
AGKAAADPFDTSSGSVQLIAIKPSALPVVHPASDRGQESSAALNGEVNKALKQKSDIEHYRNKLRLKAKR
KGYYDFPPVEAGKGLAERKMYEKAPKEVEHVLDADPELCAPFAESKNRQQMKNSVYRSRQSLNSPSPGET
EMDLLVTRERPRRGIRNSGYDTEPEIIEETNVDRVHEPRGYGRARQAKGHSETSTLSSQPSIDEVRQQMH
MLLEEAFSLASAGHAGQSRHQETYGSTQHLPYSEVVTSAPGTMTRPRAGVQWVPTYRPEMYQYSLPRPAY
RFSQLPEMVMGSPPPPVPPRTGPVAVASLRRSTSDIGSKTRMAESTGPEPTQLHDSASFAQVSRGPVSVT
QLDQSALNYSGNTVPAVFAIPAANRPGFTGYFIPTPPSSYRSQAWMSYAGENELPSQWADSVPLPGYIEA
YPRSRYQQSSPSRLPRQYSQPANLHPSLEQAPVPSAAASQQSLTENEPPDTPLTNISTAALVKAIREEVA
KLAKKQTDMFEFQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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